Build a Casanovo Docker image
Clone this repository then run this command to build a Docker image named casanovo:4.2.1 on your local system:
docker build --build-arg CASANOVO_VERSION=4.2.1 -t casanovo:4.2.1 .
Run with a command similar to:
docker run --rm -it --user $(id -u):$(id -g) -v `pwd`:`pwd` -w `pwd` --shm-size=1g casanovo:4.2.1 casanovo sequence my_file.mzML
This command includes parameters to ensure process runs as the current user and has access to the current directory.
- More information about Casanovo: https://github.com/Noble-Lab/casanovo
- How to Run Casanovo using a Nextflow workflow: https://nf-ms-dda-casanovo.readthedocs.io/