GP_EvoTransform

Calculating probabilities of sequences transforms with evolution model in time

Example

# Jukes-Cantor model t-max transformation probability between two sequences
./evo.py demo/two_seqs.fasta tmax_plot --mode=jukes-cantor -o pJC.png

# same for Kimura model
./evo.py demo/two_seqs.fasta tmax_plot --mode=kimura -o pK.png

# simmilarity matrix
./evo.py demo/multi_seqs.fasta simmatrix -o simmatrix.txt

Jukes-Cantor model

Kimura model