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@yaseminbridges
yaseminbridges committed Oct 20, 2024
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2 changes: 1 addition & 1 deletion api/pheval/analyse/generate_summary_outputs/index.html
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Expand Up @@ -1387,7 +1387,7 @@ <h2 id="src.pheval.analyse.generate_summary_outputs.create_comparison_table" cla
<span class="sd"> table_name (str): Name of the table to extract ranks from</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="n">connector</span><span class="o">.</span><span class="n">drop_table</span><span class="p">(</span><span class="n">comparison_table_name</span><span class="p">)</span>
<span class="n">excluded_columns</span> <span class="o">=</span> <span class="p">(</span><span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">drop_columns</span><span class="p">),</span> <span class="s2">&quot;identifier&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">drop_columns</span> <span class="k">else</span> <span class="p">(</span><span class="s2">&quot;identifier&quot;</span><span class="p">,)</span>
<span class="n">excluded_columns</span> <span class="o">=</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">drop_columns</span> <span class="o">+</span> <span class="p">[</span><span class="s2">&quot;identifier&quot;</span><span class="p">])</span> <span class="k">if</span> <span class="n">drop_columns</span> <span class="k">else</span> <span class="p">(</span><span class="s2">&quot;identifier&quot;</span><span class="p">,)</span>
<span class="n">connector</span><span class="o">.</span><span class="n">conn</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
<span class="sa">f</span><span class="s1">&#39;CREATE TABLE &quot;</span><span class="si">{</span><span class="n">comparison_table_name</span><span class="si">}</span><span class="s1">&quot; AS SELECT * &#39;</span>
<span class="sa">f</span><span class="s2">&quot;EXCLUDE </span><span class="si">{</span><span class="n">excluded_columns</span><span class="si">}</span><span class="s2"> FROM </span><span class="si">{</span><span class="n">table_name</span><span class="si">}</span><span class="s2">&quot;</span>
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2 changes: 1 addition & 1 deletion search/search_index.json
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88 changes: 44 additions & 44 deletions sitemap.xml
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Expand Up @@ -2,178 +2,178 @@
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
<url>
<loc>https://monarch-initiative.github.io/pheval/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/CODE_OF_CONDUCT/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/about/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/contact/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/contributing/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/developing_a_pheval_plugin/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/executing_a_benchmark/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/exomiser_pipeline/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/pipeline/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/plugins/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/roadmap/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/styleguide/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/cli/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/config_parser/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/run_metadata/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/analysis/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/assess_prioritisation_base/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/benchmark_db_manager/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/benchmark_generator/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/benchmarking_data/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/binary_classification_stats/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/disease_prioritisation_analysis/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/gene_prioritisation_analysis/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/generate_plots/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/generate_summary_outputs/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/parse_benchmark_summary/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/parse_corpus/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/prioritisation_result_types/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/rank_stats/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/run_data_parser/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/analyse/variant_prioritisation_analysis/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/infra/exomiserdb/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/post_processing/post_processing/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/prepare/create_noisy_phenopackets/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/prepare/create_spiked_vcf/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/prepare/custom_exceptions/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/prepare/prepare_corpus/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/prepare/update_phenopacket/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/runners/runner/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/utils/exomiser/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/utils/file_utils/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/utils/phenopacket_utils/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/utils/semsim_utils/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
<url>
<loc>https://monarch-initiative.github.io/pheval/api/pheval/utils/utils/</loc>
<lastmod>2024-09-27</lastmod>
<lastmod>2024-10-20</lastmod>
</url>
</urlset>
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