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Adding gene set enrichment #30

Merged
merged 1 commit into from
Apr 6, 2023
Merged

Adding gene set enrichment #30

merged 1 commit into from
Apr 6, 2023

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cmungall
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@cmungall cmungall commented Apr 6, 2023

command:

ontogpt enrichment HGNC:8858 HGNC:8859 HGNC:9719

Results:

Term enrichment test:
Commonality: Protein targeting to the Peroxisome. All the genes are involved in targeting proteins to the peroxisome membrane, matrix or both, and they are all located in cytoplasm; peroxisome; and/or endoplasmic reticulum. Additionally, they all enable different types of binding activity and/or hydrolysing activity which likely contribute to their roles in protein import

this uses the Alliance API to fetch gene descriptions then summarize over them

@cmungall cmungall merged commit 6ca1b4b into main Apr 6, 2023
@caufieldjh caufieldjh deleted the enrichment branch November 14, 2023 19:39
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