ENH: Tutorial on coreg

[larsoner]

@christianbrodbeck it occurred to me it might be nice to have a tutorial on using the coreg GUI. A lot of it would be text, but you could at least set up the inputs, have a set of text instructions, and then show the outputs that one would get. Is that feasible? Any time/interest in doing it?

It would also be cool if there were one for using a surrogate MRI, maybe as a separate tutorial.

[christianbrodbeck]

Yes completely agree, I was recently thinking of making one in the style of the slides, with annotated screenshots and descriptions, would that fit in?

[larsoner]

The more scripted you can make it the better, but yeah annotated images should work too. You should be able to include them somehow.

[agramfort]

or a nice screencast on an MNE youtube channel? :)

[dengemann]

I think Christian in fact did such a thing, at least a slide show. Eric is
video experienced afaik.
On Wed, 29 Jun 2016 at 09:06, Alexandre Gramfort [email protected]
wrote:

or a nice screencast on an MNE youtube channel? :)

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[christianbrodbeck]

Yes @dengemann we had the slides at http://www.slideshare.net/mne-python/mnepython-coregistration and http://www.slideshare.net/mne-python/mnepython-scale-mri. They're linked form the doc string of gui.coregistration. I could try to add a similar, image-heavy tutorial to he docs to make the more accessible.

[dengemann]

+100 for screen cast :)
On Fri, 1 Jul 2016 at 22:58, Christian Brodbeck [email protected]
wrote:

Yes @dengemann https://github.com/dengemann we had the slides at
http://www.slideshare.net/mne-python/mnepython-coregistration and
http://www.slideshare.net/mne-python/mnepython-scale-mri. They're linked
form the doc string of gui.coregistration. I could try to add a similar,
image-heavy tutorial to he docs to make the more accessible.

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[christianbrodbeck]

How old am I to prefer written docs :P

On Jul 1, 2016, at 7:09 PM, Denis A. Engemann [email protected] wrote:

+100 for screen cast :)
On Fri, 1 Jul 2016 at 22:58, Christian Brodbeck [email protected]
wrote:

Yes @dengemann https://github.com/dengemann we had the slides at
http://www.slideshare.net/mne-python/mnepython-coregistration and
http://www.slideshare.net/mne-python/mnepython-scale-mri. They're linked
form the doc string of gui.coregistration. I could try to add a similar,
image-heavy tutorial to he docs to make the more accessible.

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[jona-sassenhagen]

I'd prefer written docs with pics actually.

[larsoner]

Me too, easier to reference and link, etc.

[kingjr]

Also +1 for written docs, so that we can copy/paste and go at the adequate speed.

[christianbrodbeck]

A related question, I just tried to find out what exactly fsaverage is an average of, and could not find a clear description... https://surfer.nmr.mgh.harvard.edu/fswiki/FsAverage
refers to a "README file in $FREESURFER_HOME/subjects/fsaverage" but I don't seem to have that readme file. A guess based on the link at the top of the WIKI page, is FSAverage based on the "Buckner40"? (https://surfer.nmr.mgh.harvard.edu/fswiki/Buckner40Testing) Does somebody here know?

[larsoner]

http://openwetware.org/wiki/Beauchamp:FSAverageReadme But even from this I'm not sure, maybe there is a trail you can follow in there

[christianbrodbeck]

Thanks @Eric89GXL ! make_average_surface.log indeed references the Buckner40 subjects

[larsoner]

Please add notes to our doc for the next person who is curious

[larsoner]

Closing for #1495