Skip to content

Commit

Permalink
added to code for handling bioconductor setup to case_study vignette
Browse files Browse the repository at this point in the history
  • Loading branch information
mmulvahill committed Dec 13, 2017
1 parent a33dfbb commit 2d43cc5
Showing 1 changed file with 6 additions and 1 deletion.
7 changes: 6 additions & 1 deletion vignettes/case_study.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,12 @@ Here, we tried tackling the same question using cRegulme data. We started from t
We started by obtaining the lists of differentially expressed TFs and microRNAs which were compiled from the previous literature and microarrays profiling respectively.

```{r install_suggested_package}
if (!require(BiocInstaller)) source("https://bioconductor.org/biocLite.R")
if (!require(BiocInstaller)) {
source("https://bioconductor.org/biocLite.R")
library(BiocInstaller)
}
biocLite(ask = F)
if (!require(org.Hs.eg.db)) biocLite("org.Hs.eg.db")
if (!require(AnnotationDbi)) biocLite("AnnotationDbi")
if (!require(clusterProfiler)) biocLite("clusterProfiler")
Expand Down

0 comments on commit 2d43cc5

Please sign in to comment.