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Bump the pip-all-updates group with 8 updates #328

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@dependabot dependabot bot commented on behalf of github Mar 1, 2025

Bumps the pip-all-updates group with 8 updates:

Package From To
coverage 7.6.10 7.6.12
matplotlib 3.10.0 3.10.1
ruff 0.9.4 0.9.9
scipy 1.15.1 1.15.2
transformers 4.48.2 4.49.0
xgboost 2.1.3 2.1.4
lightgbm 4.5.0 4.6.0
tabpfn 2.0.5 2.0.6

Updates coverage from 7.6.10 to 7.6.12

Changelog

Sourced from coverage's changelog.

Version 7.6.12 — 2025-02-11

  • Fix: some aarch64 distributions were missing (issue 1927_). These are now building reliably.

.. _issue 1927: nedbat/coveragepy#1927

.. _changes_7-6-11:

Version 7.6.11 — 2025-02-08

  • Fix: a memory leak in CTracer has been fixed. The details are in issue 1924_ and pytest-dev 676_. This should reduce the memory footprint for everyone even if it hadn't caused a problem before.

  • We now ship a py3-none-any.whl wheel file. Thanks, Russell Keith-Magee <pull 1914_>_.

.. _pull 1914: nedbat/coveragepy#1914 .. _issue 1924: nedbat/coveragepy#1924 .. _pytest-dev 676: pytest-dev/pytest-cov#676

.. _changes_7-6-10:

Commits
  • 7e5373e docs: sample HTML for 7.6.12
  • a4ed38b docs: prep for 7.6.12
  • ce4efdc build: fix aarch64 kits #1927
  • a1f3192 build: don't publish if kit building failed
  • bb68f99 chore: bump the action-dependencies group with 2 updates (#1926)
  • f3d6b4a refactor: check for more kinds of constant tests
  • 67899ea refactor: we no longer care what kind of constant the compile-time constants are
  • c850f20 refactor: macOS is MACOS, not OSX
  • a1b2c1a build: there are always tweaks to howto.txt
  • 9c03039 build: bump version to 7.6.12
  • Additional commits viewable in compare view

Updates matplotlib from 3.10.0 to 3.10.1

Release notes

Sourced from matplotlib's releases.

REL: v3.10.1

This is the first bugfix release of the 3.10.x series.

This release contains several bug-fixes and adjustments:

  • Respect array alpha with interpolation_stage='rgba' in _Imagebase::_make_image
  • Remove md5 usage to prevent issues on FIPS enabled systems
  • Fix pyplot.matshow figure handling
  • Fix modifying Axes' position also alters the original Bbox object used for initialization
  • Fix title position for polar plots
  • Add version gate to GTK4 calls when necessary
  • Raise warning if both c and facecolors are used in scatter plot

As well as several documentation improvements and corrections.

Commits
  • 6fc8169 REL 3.10.1
  • 33361fb Release notes v3.10.1
  • 2495bbc Fix toctrees for 3.10 release notes
  • 526785e Github stats v3.10.1
  • d23b173 Merge v3.10.0-doc into v3.10.x
  • 9fe0dad Merge pull request #29682 from meeseeksmachine/auto-backport-of-pr-29680-on-v...
  • d3cf53d Merge pull request #29683 from meeseeksmachine/auto-backport-of-pr-29670-on-v...
  • 2944994 Backport PR #29670: DOC: change marginal scatter plot to subplot_mosaic
  • b4f94a4 Backport PR #29680: DOC: fix the bug of examples\event_handling
  • 4f3d478 Merge pull request #29676 from meeseeksmachine/auto-backport-of-pr-29666-on-v...
  • Additional commits viewable in compare view

Updates ruff from 0.9.4 to 0.9.9

Release notes

Sourced from ruff's releases.

0.9.9

Release Notes

Preview features

  • Fix caching of unsupported-syntax errors (#16425)

Bug fixes

  • Only show unsupported-syntax errors in editors when preview mode is enabled (#16429)

Contributors

Install ruff 0.9.9

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.9.9/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy ByPass -c "irm https://github.com/astral-sh/ruff/releases/download/0.9.9/ruff-installer.ps1 | iex"

Download ruff 0.9.9

File Platform Checksum
ruff-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum
ruff-x86_64-apple-darwin.tar.gz Intel macOS checksum
ruff-aarch64-pc-windows-msvc.zip ARM64 Windows checksum
ruff-i686-pc-windows-msvc.zip x86 Windows checksum
ruff-x86_64-pc-windows-msvc.zip x64 Windows checksum
ruff-aarch64-unknown-linux-gnu.tar.gz ARM64 Linux checksum
ruff-i686-unknown-linux-gnu.tar.gz x86 Linux checksum
ruff-powerpc64-unknown-linux-gnu.tar.gz PPC64 Linux checksum
ruff-powerpc64le-unknown-linux-gnu.tar.gz PPC64LE Linux checksum
ruff-s390x-unknown-linux-gnu.tar.gz S390x Linux checksum
ruff-x86_64-unknown-linux-gnu.tar.gz x64 Linux checksum
ruff-armv7-unknown-linux-gnueabihf.tar.gz ARMv7 Linux checksum
ruff-aarch64-unknown-linux-musl.tar.gz ARM64 MUSL Linux checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.9.9

Preview features

  • Fix caching of unsupported-syntax errors (#16425)

Bug fixes

  • Only show unsupported-syntax errors in editors when preview mode is enabled (#16429)

0.9.8

Preview features

  • Start detecting version-related syntax errors in the parser (#16090)

Rule changes

  • [pylint] Mark fix unsafe (PLW1507) (#16343)
  • [pylint] Catch case np.nan/case math.nan in match statements (PLW0177) (#16378)
  • [ruff] Add more Pydantic models variants to the list of default copy semantics (RUF012) (#16291)

Server

  • Avoid indexing the project if configurationPreference is editorOnly (#16381)
  • Avoid unnecessary info at non-trace server log level (#16389)
  • Expand ruff.configuration to allow inline config (#16296)
  • Notify users for invalid client settings (#16361)

Configuration

  • Add per-file-target-version option (#16257)

Bug fixes

  • [refurb] Do not consider docstring(s) (FURB156) (#16391)
  • [flake8-self] Ignore attribute accesses on instance-like variables (SLF001) (#16149)
  • [pylint] Fix false positives, add missing methods, and support positional-only parameters (PLE0302) (#16263)
  • [flake8-pyi] Mark PYI030 fix unsafe when comments are deleted (#16322)

Documentation

  • Fix example for S611 (#16316)
  • Normalize inconsistent markdown headings in docstrings (#16364)
  • Document MSRV policy (#16384)

0.9.7

Preview features

... (truncated)

Commits
  • 091d0af Bump version to Ruff 0.9.9 (#16434)
  • 3d72138 Check LinterSettings::preview for version-related syntax errors (#16429)
  • 4a23756 Avoid caching files with unsupported syntax errors (#16425)
  • af62f79 Prioritize "bug" label for changelog sections (#16433)
  • 0ced8d0 [flake8-copyright] Add links to applicable options (CPY001) (#16421)
  • a8e171f Fix string-length limit in documentation for PYI054 (#16432)
  • cf83584 Show version-related syntax errors in the playground (#16419)
  • 764aa0e Allow passing ParseOptions to inline tests (#16357)
  • 568cf88 Bump version to 0.9.8 (#16414)
  • 040071b [red-knot] Ignore surrounding whitespace when looking for `<!-- snapshot-diag...
  • Additional commits viewable in compare view

Updates scipy from 1.15.1 to 1.15.2

Release notes

Sourced from scipy's releases.

SciPy 1.15.2 Release Notes

SciPy 1.15.2 is a bug-fix release with no new features compared to 1.15.1. Free-threaded Python 3.13 wheels for Linux ARM platform are available on PyPI starting with this release.

Authors

  • Name (commits)
  • Peter Bell (1)
  • Charles Bousseau (1) +
  • Jake Bowhay (3)
  • Matthew Brett (1)
  • Ralf Gommers (3)
  • Rohit Goswami (1)
  • Matt Haberland (4)
  • Parth Nobel (1) +
  • Tyler Reddy (33)
  • Daniel Schmitz (2)
  • Dan Schult (5)
  • Scott Shambaugh (2)
  • Edgar Andrés Margffoy Tuay (1)
  • Warren Weckesser (4)

A total of 14 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

Commits
  • 0f1fd4a REL: 1.15.2 rel commit [wheel build]
  • 7df5cc6 Merge pull request #22471 from tylerjereddy/treddy_backports_1.15.2
  • a046fa0 CI: PR 22471 wheel builds [wheel build]
  • 198aa52 DOC: PR 22471 revisions
  • ba61a58 CI: PR 22471 revisions
  • e0251ee do not check dtype in test_compare_with_GCVSPL
  • fcc68dd MAINT: integrate.cumulative_simpson: bump test tolerance
  • 6d2c059 BUG: wrap median_filter stability (#22402)
  • 59cb7d4 DOC: PR 22471 revisions
  • a60d17f MAINT: pearsonr SIMD-related shim
  • Additional commits viewable in compare view

Updates transformers from 4.48.2 to 4.49.0

Release notes

Sourced from transformers's releases.

Patch release v4.48.3

This ends the python3.9 issues mostly!

For some very niche cases, the new rope embedding introduced device failures

Num items in batch

  • Fix model kwargs (#35875) by @​muellerzr: this is long due, sorry that it took so long. Some models were not compatible with the num_items_in_batch

Finally the fix to Gemma2 is propagated to paligemma2!

Commits

Updates xgboost from 2.1.3 to 2.1.4

Release notes

Sourced from xgboost's releases.

2.1.4 Patch Release

The 2.1.4 patch release incorporates the following fixes on top of the 2.1.3 release:

  • XGBoost is now compatible with scikit-learn 1.6 (#11021, #11162)
  • Build wheels with CUDA 12.8 and enable Blackwell support (#11187, #11202)
  • Adapt to RMM 25.02 logger changes (#11153)

Full Changelog: dmlc/xgboost@v2.1.3...v2.1.4

Additional artifacts:

You can verify the downloaded packages by running the following command on your Unix shell:

echo "<hash> <artifact>" | shasum -a 256 --check
b6ce5870d03cc1233cad5ff8460f670a2aff78625adfb578c0b9eec3b8b88406  xgboost-2.1.4.tar.gz
9780ba8314824eac7b8565cc2af8ea692fd4898712052a49132ac3fdf7c0ab2b  xgboost_r_gpu_linux_2.1.4.tar.gz

Experimental binary packages for R with CUDA enabled

  • xgboost_r_gpu_linux_2.1.4.tar.gz: Download

Source tarball

Commits

Updates lightgbm from 4.5.0 to 4.6.0

Release notes

Sourced from lightgbm's releases.

v4.6.0

Changes

💡 New Features

🔨 Breaking

  • [R-package] require lgb.Dataset, remove support for passing 'colnames' and 'categorical_feature' for lgb.train() and lgb.cv() @​jameslamb (#6714)
  • [python-package] support sub-classing scikit-learn estimators @​jameslamb (#6783)
  • [python-package] do not copy column-major numpy arrays when creating Dataset from list of arrays @​jmoralez (#6773)
  • [python-package] remove support for passing 'feature_name' and 'categorical_feature' through train() and cv() @​jameslamb (#6706)
  • [python-package] require scikit-learn>=0.24.2, make scikit-learn estimators compatible with scikit-learn>=1.6.0dev @​vnherdeiro (#6651)
  • [ci] Require CMake 3.28 and replace FetchContent_Populate with FetchContent_MakeAvailable @​StrikerRUS (#6550)

🚀 Efficiency Improvement

  • [python-package] do not copy column-major numpy arrays when predicting @​jmoralez (#6751)
  • [python-package] do not copy column-major numpy arrays when creating Dataset @​jmoralez (#6721)

🐛 Bug Fixes

  • [python-package] Separately check whether pyarrow and cffi are installed @​mlondschien (#6785)
  • [c++] Fixed Predictor lifecycle and trees initialization in Contrib mode @​AndreyOrb (#6778)
  • [python-package] Infer feature names from pyarrow.Table @​mlondschien (#6781)
  • [python-package] Fix inconsistency in predict() output shape for 1-tree models @​RektPunk (#6753)
  • [fix] resolve potential attack in linker connection building @​shiyu1994 (#6752)
  • [R-package] Avoid bashisms (non-POSIX code) in R-package/configure @​smoser (#6746)
  • [c++] fix parallel_tree_learner_split_info @​moming39 (#6738)
  • [c++] Fix dump_model() information for root node @​neNasko1 (#6569)
  • [cmake] [R-package] include R-for-macOS vendored libs dir in OpenMP search path (fixes #6628) @​jameslamb (#6629)
  • [R-package] only warn about early stopping and DART boosting being incompatible if early stopping was requested @​serkor1 (#6619)
  • [cmake] fixes static build for macos with OpenMP enabled (fixes #6601) @​Mottl (#6600)

📖 Documentation

... (truncated)

Commits
  • d02a01a release v4.6.0 (#6796)
  • d24260f [R-package] require lgb.Dataset, remove support for passing 'colnames' and 'c...
  • c6d90bc [python-package] support sub-classing scikit-learn estimators (#6783)
  • 768f642 [c++] update to fmt 11.1.2, fast_double_parser 0.8.0 (#6802)
  • 1531d87 [ci] fix valgrind workflow (#6816)
  • 188f1be [ci] validate pyproject file by json schema (#6813)
  • 81922a7 [ci] [python-package] update pre-commit hooks to latest versions (#6817)
  • 2db0b25 [python-package] Separately check whether pyarrow and cffi are installed ...
  • c9de57b [CUDA] fix setting of CUDA architectures and enable support for NVIDIA Blackw...
  • f2b959c [ci]: Bump release-drafter/release-drafter from 6.0.0 to 6.1.0 in the ci-depe...
  • Additional commits viewable in compare view

Updates tabpfn from 2.0.5 to 2.0.6

Commits

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Bumps the pip-all-updates group with 8 updates:

| Package | From | To |
| --- | --- | --- |
| [coverage](https://github.com/nedbat/coveragepy) | `7.6.10` | `7.6.12` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.0` | `3.10.1` |
| [ruff](https://github.com/astral-sh/ruff) | `0.9.4` | `0.9.9` |
| [scipy](https://github.com/scipy/scipy) | `1.15.1` | `1.15.2` |
| [transformers](https://github.com/huggingface/transformers) | `4.48.2` | `4.49.0` |
| [xgboost](https://github.com/dmlc/xgboost) | `2.1.3` | `2.1.4` |
| [lightgbm](https://github.com/microsoft/LightGBM) | `4.5.0` | `4.6.0` |
| [tabpfn](https://github.com/priorlabs/tabpfn) | `2.0.5` | `2.0.6` |


Updates `coverage` from 7.6.10 to 7.6.12
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.6.10...7.6.12)

Updates `matplotlib` from 3.10.0 to 3.10.1
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.10.0...v3.10.1)

Updates `ruff` from 0.9.4 to 0.9.9
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.9.4...0.9.9)

Updates `scipy` from 1.15.1 to 1.15.2
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.15.1...v1.15.2)

Updates `transformers` from 4.48.2 to 4.49.0
- [Release notes](https://github.com/huggingface/transformers/releases)
- [Commits](huggingface/transformers@v4.48.2...v4.49.0)

Updates `xgboost` from 2.1.3 to 2.1.4
- [Release notes](https://github.com/dmlc/xgboost/releases)
- [Changelog](https://github.com/dmlc/xgboost/blob/master/NEWS.md)
- [Commits](dmlc/xgboost@v2.1.3...v2.1.4)

Updates `lightgbm` from 4.5.0 to 4.6.0
- [Release notes](https://github.com/microsoft/LightGBM/releases)
- [Commits](microsoft/LightGBM@v4.5.0...v4.6.0)

Updates `tabpfn` from 2.0.5 to 2.0.6
- [Commits](https://github.com/priorlabs/tabpfn/commits)

---
updated-dependencies:
- dependency-name: coverage
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-all-updates
- dependency-name: matplotlib
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-all-updates
- dependency-name: ruff
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-all-updates
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-all-updates
- dependency-name: transformers
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip-all-updates
- dependency-name: xgboost
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-all-updates
- dependency-name: lightgbm
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip-all-updates
- dependency-name: tabpfn
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-all-updates
...

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