--with-missing-fields: pad AD & PL vector length #22
Workflow file for this run
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name: build | |
on: [push, pull_request] | |
jobs: | |
lint: | |
runs-on: ubuntu-20.04 | |
steps: | |
- uses: actions/checkout@v2 | |
- name: deps | |
run: | | |
sudo apt-get -qq update | |
sudo apt-get install -y clang-format cppcheck python3-pip | |
sudo pip3 install --system pre-commit | |
- name: pre-commit | |
run: pre-commit run --all-files | |
build: | |
runs-on: ubuntu-20.04 | |
steps: | |
- uses: actions/checkout@v2 | |
- name: build | |
run: | | |
docker pull ubuntu:18.04 | |
docker pull ubuntu:20.04 | |
docker build --no-cache -t spvcf . | |
- name: inspect | |
run: | | |
docker run -v $(pwd):/mnt spvcf cp /usr/local/bin/spvcf /mnt | |
ldd spvcf | |
sha256sum spvcf | |
- name: upload exe | |
uses: actions/upload-artifact@v2 | |
with: | |
name: spvcf | |
path: spvcf | |
- name: WDL test | |
run: | | |
pip3 install --upgrade miniwdl | |
miniwdl run test/test_spvcf.wdl vcf_gz=test/data/small.vcf.gz docker=spvcf:latest --verbose | |
- name: docker login ghcr.io | |
uses: docker/login-action@v1 | |
with: | |
registry: ghcr.io | |
username: ${{ github.repository_owner }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
- name: push image | |
run: | | |
REPO="ghcr.io/mlin/spvcf" | |
TAG="$(git describe --tags --always --dirty)" | |
docker tag spvcf:latest "${REPO}:${TAG}" | |
docker push "${REPO}:${TAG}" |