Fix and test dependency lower bounds

.github/workflows/CI.yml

@@ -14,7 +14,7 @@ concurrency:
   cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ matrix.num_threads }} threads - ${{ github.event_name }}
+    name: ${{ matrix.downgrade && 'Downgrade / ' || '' }}Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ matrix.num_threads }} threads - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
@@ -29,16 +29,27 @@ jobs:
         num_threads:
           - 1
           - 2
+        downgrade:
+          - false
+        include:
+          - version: '1'
+            os: ubuntu-latest
+            arch: x64
+            num_threads: 2
+            downgrade: true
     steps:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
       - uses: julia-actions/cache@v1
+      - uses: cjdoris/julia-downgrade-compat-action@v1
+        with:
+          skip: LinearAlgebra,Random,Statistics
+        if: ${{ matrix.downgrade }}
+        name: Downgrade dependencies to oldest supported versions
       - uses: julia-actions/julia-buildpkg@v1
-      - name: Fix Transducers to last-compatible version
-        run: julia --project -e 'using Pkg; Pkg.pin(name="Transducers", version=v"0.4.75")'
       - uses: julia-actions/julia-runtest@v1
         env:
           JULIA_NUM_THREADS: ${{ matrix.num_threads }}

.github/workflows/IntegrationTests.yml

@@ -6,7 +6,7 @@ on:
   pull_request:
 jobs:
   test:
-    name: ${{ matrix.package }} - Julia ${{ matrix.version }} 
+    name: ${{ matrix.downgrade && 'Downgrade / ' || '' }}${{ matrix.package }} - Julia ${{ matrix.version }} 
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
@@ -16,17 +16,20 @@ jobs:
           - DynamicHMC
           - AdvancedHMC
           - Turing
-        include:
-          - package: DynamicHMC
-            version: 'nightly'
-          - package: Turing
-            version: 'nightly'
+        downgrade:
+          - true
+          - false
     steps:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
           arch: x64
+      - uses: cjdoris/julia-downgrade-compat-action@v1
+        with:
+          skip: LinearAlgebra,Random,Statistics
+        if: ${{ matrix.downgrade }}
+        name: Downgrade dependencies to oldest supported versions
       - uses: julia-actions/julia-buildpkg@v1
       - run: |
           julia --code-coverage=user -e '

Project.toml

@@ -1,7 +1,7 @@
 name = "Pathfinder"
 uuid = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454"
 authors = ["Seth Axen <[email protected]> and contributors"]
-version = "0.8.2"
+version = "0.8.3"
 
 [deps]
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
@@ -36,28 +36,29 @@ PathfinderDynamicHMCExt = "DynamicHMC"
 PathfinderTuringExt = ["Accessors", "DynamicPPL", "MCMCChains", "Turing"]
 
 [compat]
-Accessors = "0.1"
-Distributions = "0.25"
-DynamicPPL = "0.21, 0.22, 0.23, 0.24"
-Folds = "0.2"
-ForwardDiff = "0.10"
+Accessors = "0.1.1"
+Distributions = "0.25.57"
+DynamicHMC = "3.4.0"
+DynamicPPL = "0.21.5, 0.22, 0.23, 0.24"
+Folds = "0.2.2"
+ForwardDiff = "0.10.13"
 IrrationalConstants = "0.1.1, 0.2"
 LinearAlgebra = "1.6"
-LogDensityProblems = "2"
-MCMCChains = "5, 6"
-Optim = "1.4"
-Optimization = "3"
-OptimizationOptimJL = "0.1, 0.2"
+LogDensityProblems = "2.1.0"
+MCMCChains = "5.3.0, 6"
+Optim = "1.6.2"
+Optimization = "3.5"
+OptimizationOptimJL = "0.1.1, 0.2"
 PDMats = "0.11.26"
 PSIS = "0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9"
 ProgressLogging = "0.1.4"
 Random = "1.6"
-Requires = "1"
-SciMLBase = "1.8.1, 2"
+Requires = "1.1"
+SciMLBase = "1.61.2, 2"
 Statistics = "1.6"
-StatsBase = "0.33, 0.34"
-Transducers = "0.4.5"
-Turing = "0.24, 0.25, 0.26, 0.27, 0.28, 0.29, 0.30"
+StatsBase = "0.33.1, 0.34"
+Transducers = "0.4.66"
+Turing = "0.24.2, 0.25, 0.26, 0.27, 0.28, 0.29, 0.30"
 UnPack = "1"
 julia = "1.6"
 

docs/Project.toml

@@ -17,13 +17,13 @@ Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
 [compat]
 AdvancedHMC = "0.4, 0.5, 0.6"
 Documenter = "1"
-DynamicHMC = "3"
-ForwardDiff = "0.10"
-LogDensityProblems = "1, 2"
-LogDensityProblemsAD = "1, 2"
+DynamicHMC = "3.4.0"
+ForwardDiff = "0.10.13"
+LogDensityProblems = "2.1.0"
+LogDensityProblemsAD = "1.4"
 Pathfinder = "0.8"
-StatsFuns = "0.9, 1"
-StatsPlots = "0.14, 0.15"
+StatsFuns = "1"
+StatsPlots = "0.14.21, 0.15"
 TransformVariables = "0.6, 0.7, 0.8"
-TransformedLogDensities = "1"
-Turing = "0.24, 0.25, 0.26, 0.27, 0.28, 0.29, 0.30"
+TransformedLogDensities = "1.0.2"
+Turing = "0.24.2, 0.25, 0.26, 0.27, 0.28, 0.29, 0.30"

test/integration/AdvancedHMC/Project.toml

@@ -17,15 +17,15 @@ TransformedLogDensities = "f9bc47f6-f3f8-4f3b-ab21-f8bc73906f26"
 
 [compat]
 AdvancedHMC = "0.4, 0.5, 0.6"
-Distributions = "0.25"
-ForwardDiff = "0.10"
-LogDensityProblems = "1, 2"
-LogDensityProblemsAD = "1"
+Distributions = "0.25.57"
+ForwardDiff = "0.10.13"
+LogDensityProblems = "2.1.0"
+LogDensityProblemsAD = "1.0.1, 2"
 MCMCDiagnosticTools = "0.3"
-Optim = "1.4"
-Pathfinder = "0.7, 0.8"
+Optim = "1.6.2"
+Pathfinder = "0.8"
 Statistics = "1"
-StatsFuns = "0.9, 1"
+StatsFuns = "1"
 TransformVariables = "0.6, 0.7, 0.8"
-TransformedLogDensities = "1"
+TransformedLogDensities = "1.0.2"
 julia = "1.6"

test/integration/DynamicHMC/Project.toml

@@ -14,14 +14,14 @@ TransformVariables = "84d833dd-6860-57f9-a1a7-6da5db126cff"
 TransformedLogDensities = "f9bc47f6-f3f8-4f3b-ab21-f8bc73906f26"
 
 [compat]
-DynamicHMC = "3"
-LogDensityProblems = "1, 2"
-LogDensityProblemsAD = "1"
+DynamicHMC = "3.4.0"
+LogDensityProblems = "2.1.0"
+LogDensityProblemsAD = "1.0.1"
 MCMCDiagnosticTools = "0.3"
-Optim = "1.4"
-Pathfinder = "0.7, 0.8"
+Optim = "1.6.2"
+Pathfinder = "0.8"
 Statistics = "1"
-StatsFuns = "0.9, 1"
+StatsFuns = "1"
 TransformVariables = "0.6, 0.7, 0.8"
-TransformedLogDensities = "1"
+TransformedLogDensities = "1.0.2"
 julia = "1.6"

test/integration/Turing/Project.toml

@@ -5,6 +5,6 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
 
 [compat]
-Pathfinder = "0.5, 0.6, 0.7, 0.8"
-Turing = "0.24, 0.25, 0.26, 0.27, 0.28, 0.29, 0.30"
+Pathfinder = "0.8"
+Turing = "0.24.2, 0.25, 0.26, 0.27, 0.28, 0.29, 0.30"
 julia = "1.6"