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🚧 Testing Installation of IRKernel #15

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🚧 Testing Installation of IRKernel #15

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6 changes: 6 additions & 0 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,12 @@ RUN <<EOF
pip install --no-cache-dir --requirement ${ANALYTICAL_PLATFORM_DIRECTORY}/requirements.txt
EOF

# R Kernel
COPY --chown=nobody:nobody --chmod=0755 src/usr/local/bin/install-r-kernel.sh /usr/local/bin/install-r-kernel.sh
RUN <<EOF
bash /usr/local/bin/install-r-kernel.sh
EOF

USER ${CONTAINER_USER}
WORKDIR /home/${CONTAINER_USER}
EXPOSE 8080
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13 changes: 13 additions & 0 deletions src/usr/local/bin/install-r-kernel.sh
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@@ -0,0 +1,13 @@
#!/usr/bin/env bash

# Install R kernel for Jupyter
# This does show R in the Launcher but it is version 4.3.1 and not 4.4.1 which is what we have installed in the Analytical Platform Cloud Environment Base Image
# conda install r-irkernel

# This does show R in the launcher and it's version 4.4.0 :(
# This does appear to be the cleanest way so far
conda install r-irkernel -c conda-forge -y

# R -e "install.packages('IRkernel')"
# R -e "IRkernel::installspec(user = TRUE)"
# R -e "if ('IRkernel' %in% rownames(installed.packages())) { cat('IRkernel is installed.\n') } else { cat('IRkernel is not installed.\n') }"