[js/webgpu] Fix issue of timestamp query (#19258)

When we enable webgpu profiling mode between session.create and
session.run, current implementation has a problem to create querySet
(and also queryResolveBuffer) if we share the commandEncoder with inputs
upload. This PR fixes this by moving the querySet creation to the place
we set queryType.

js/web/lib/wasm/jsep/backend-webgpu.ts

@@ -222,16 +222,6 @@ export class WebGpuBackend {
   getCommandEncoder(): GPUCommandEncoder {
     if (!this.commandEncoder) {
       this.commandEncoder = this.device.createCommandEncoder();
-
-      if (this.queryType !== 'none' && typeof this.querySet === 'undefined') {
-        this.querySet = this.device.createQuerySet({
-          type: 'timestamp',
-          count: this.maxDispatchNumber * 2,
-        });
-        this.queryResolveBuffer = this.device.createBuffer(
-            // eslint-disable-next-line no-bitwise
-            {size: this.maxDispatchNumber * 2 * 8, usage: GPUBufferUsage.COPY_SRC | GPUBufferUsage.QUERY_RESOLVE});
-      }
     }
     return this.commandEncoder;
   }
@@ -654,6 +644,16 @@ export class WebGpuBackend {
       } else if (this.device.features.has('timestamp-query')) {
         this.queryType = 'at-passes';
       }
+
+      if (this.queryType !== 'none' && typeof this.querySet === 'undefined') {
+        this.querySet = this.device.createQuerySet({
+          type: 'timestamp',
+          count: this.maxDispatchNumber * 2,
+        });
+        this.queryResolveBuffer = this.device.createBuffer(
+            // eslint-disable-next-line no-bitwise
+            {size: this.maxDispatchNumber * 2 * 8, usage: GPUBufferUsage.COPY_SRC | GPUBufferUsage.QUERY_RESOLVE});
+      }
     }
   }
   onRunStart(): void {