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kyclai authored Feb 18, 2022
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2 changes: 1 addition & 1 deletion README.md
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# IoMT FHIR Connector for Azure

[![Build Status](https://microsofthealthoss.visualstudio.com/FhirServer/_apis/build/status/IoMT/IoMT%20CI%20Build?branchName=master)](https://microsofthealthoss.visualstudio.com/FhirServer/_build/latest?definitionId=12&branchName=master)
[![Build Status](https://microsofthealthoss.visualstudio.com/FhirServer/_apis/build/status/IoMT/IoMT%20CI%20Build?branchName=main)](https://microsofthealthoss.visualstudio.com/FhirServer/_build/latest?definitionId=12&branchName=main)

The IoMT FHIR Connector for Azure is an open-source project for ingesting data from IoMT (internet of medical things) devices and persisting the data in a FHIR® server. The goal of this Microsoft Healthcare project is to enable developers to rapidly deploy a service for ingesting high frequency IoMT data and landing the data in a FHIR server of their choice.

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2 changes: 1 addition & 1 deletion deploy/scripts/Create-IomtFhirSandboxEnvironment.ps1
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Expand Up @@ -38,7 +38,7 @@ param
[string]$SourceRepository = "https://github.com/microsoft/iomt-fhir",

[Parameter(Mandatory = $false)]
[string]$SourceRevision = "master",
[string]$SourceRevision = "main",

[parameter(Mandatory = $false)]
[SecureString]$AdminPassword,
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2 changes: 1 addition & 1 deletion deploy/scripts/Create-IomtWebJobsEnvironment.ps1
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Expand Up @@ -33,7 +33,7 @@ param
[string]$SourceRepository = "https://github.com/microsoft/iomt-fhir",

[Parameter(Mandatory = $false)]
[string]$SourceRevision = "master",
[string]$SourceRevision = "main",

[Parameter(Mandatory = $true)]
[string]$FhirServiceUrl,
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2 changes: 1 addition & 1 deletion deploy/templates/consumption-azuredeploy.json
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Expand Up @@ -19,7 +19,7 @@
},
"RepositoryBranch": {
"type": "string",
"defaultValue": "master",
"defaultValue": "main",
"metadata": {
"description": "Source code branch to deploy."
}
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4 changes: 2 additions & 2 deletions deploy/templates/default-azuredeploy-sandbox.json
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Expand Up @@ -19,7 +19,7 @@
},
"RepositoryBranch": {
"type": "string",
"defaultValue": "master",
"defaultValue": "main",
"metadata": {
"description": "Source code branch to deploy."
}
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},
"IomtConnectorTemplateUrl": {
"type": "string",
"defaultValue": "https://raw.githubusercontent.com/Microsoft/iomt-fhir/master/deploy/templates/default-managed-identity-azuredeploy.json",
"defaultValue": "https://raw.githubusercontent.com/Microsoft/iomt-fhir/main/deploy/templates/default-managed-identity-azuredeploy.json",
"metadata": {
"description": "URL for IOMT Connector template"
}
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2 changes: 1 addition & 1 deletion deploy/templates/default-azuredeploy-webjobs.json
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Expand Up @@ -19,7 +19,7 @@
},
"RepositoryBranch": {
"type": "string",
"defaultValue": "master",
"defaultValue": "main",
"metadata": {
"description": "Source code branch to deploy."
}
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2 changes: 1 addition & 1 deletion deploy/templates/default-managed-identity-azuredeploy.json
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Expand Up @@ -19,7 +19,7 @@
},
"RepositoryBranch": {
"type": "string",
"defaultValue": "master",
"defaultValue": "main",
"metadata": {
"description": "Source code branch to deploy."
}
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2 changes: 1 addition & 1 deletion deploy/templates/premium-azuredeploy.json
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Expand Up @@ -19,7 +19,7 @@
},
"RepositoryBranch": {
"type": "string",
"defaultValue": "master",
"defaultValue": "main",
"metadata": {
"description": "Source code branch to deploy."
}
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2 changes: 1 addition & 1 deletion docs/ARMInstallation.md
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This article details provisioning and installation of the IoMT FHIR Connector for Azure and connecting to Azure API for FHIR with a managed identity in the same subscription using an ARM template.

## ARM Template Provisioning
<a href="https://portal.azure.com/#create/Microsoft.Template/uri/https%3A%2F%2Fraw.githubusercontent.com%2FMicrosoft%2Fiomt-fhir%2Fmaster%2Fdeploy%2Ftemplates%2Fdefault-managed-identity-azuredeploy.json" target="_blank">
<a href="https://portal.azure.com/#create/Microsoft.Template/uri/https%3A%2F%2Fraw.githubusercontent.com%2FMicrosoft%2Fiomt-fhir%2Fmain%2Fdeploy%2Ftemplates%2Fdefault-managed-identity-azuredeploy.json" target="_blank">
<img src="https://azuredeploy.net/deploybutton.png"/>
</a>

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Expand Up @@ -91,7 +91,7 @@ export const DeviceEditFormTutorial = (props: {}) => {
</tbody>
</table>
<p>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/master/docs/Configuration.md">IoMT Mapping Configuration</a>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/main/docs/Configuration.md">IoMT Mapping Configuration</a>
</p>
</CardBody>
</Card>
Expand Down Expand Up @@ -146,7 +146,7 @@ export const FhirValueFormTutorial = (props: {}) => {
</tbody>
</table>
<p>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/master/docs/Configuration.md">IoMT Mapping Configuration</a>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/main/docs/Configuration.md">IoMT Mapping Configuration</a>
</p>
</CardBody>
</Card>
Expand All @@ -170,7 +170,7 @@ export const FhirComponentsFormTutorial = (props: {}) => {
<li>Codings of each component should be specified to the value in it.</li>
</ul>
<p>
Please check "Heart Rate - Sampled Data" as an example in <a href="https://github.com/microsoft/iomt-fhir/blob/master/docs/Configuration.md">IoMT Mapping Configuration</a>
Please check "Heart Rate - Sampled Data" as an example in <a href="https://github.com/microsoft/iomt-fhir/blob/main/docs/Configuration.md">IoMT Mapping Configuration</a>
</p>
</CardBody>
</Card>
Expand All @@ -188,7 +188,7 @@ export const FhirCodesFormTutorial = (props: {}) => {
Add <a href="https://www.hl7.org/fhir/observation-definitions.html#Observation.code">Observation.code</a> to the final FHIR Observation resource.
</p>
<p>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/master/docs/Configuration.md">IoMT Mapping Configuration</a>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/main/docs/Configuration.md">IoMT Mapping Configuration</a>
</p>
</CardBody>
</Card>
Expand All @@ -209,7 +209,7 @@ export const FhirCategoryFormTutorial = (props: {}) => {
This is optional information.
</p>
<p>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/master/docs/Configuration.md">IoMT Mapping Configuration</a>
For more information, please visit: <a href="https://github.com/microsoft/iomt-fhir/blob/main/docs/Configuration.md">IoMT Mapping Configuration</a>
</p>
</CardBody>
</Card>
Expand All @@ -235,7 +235,7 @@ export const FhirGroupingGroupTutorial = (props: {}) => {
<li>1 Day</li>
</ul>
<p>
For more information, please check "PeriodInterval" in: <a href="https://github.com/microsoft/iomt-fhir/blob/master/docs/Configuration.md">IoMT Mapping Configuration</a>
For more information, please check "PeriodInterval" in: <a href="https://github.com/microsoft/iomt-fhir/blob/main/docs/Configuration.md">IoMT Mapping Configuration</a>
</p>
</CardBody>
</Card>
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Expand Up @@ -49,7 +49,7 @@ const MappingImportModal = (props: { onImported: Function }) => {
<ModalHeader toggle={toggle}>Enter mapping templates to import</ModalHeader>
<ModalBody>
<div className="iomt-cm-modal-description">
Full example templates can be found under <a href="https://github.com/microsoft/iomt-fhir/tree/master/sample/templates">here</a>.
Full example templates can be found under <a href="https://github.com/microsoft/iomt-fhir/tree/main/sample/templates">here</a>.
</div>
<Row>
{
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2 changes: 1 addition & 1 deletion tools/data-mapper/README.md
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Expand Up @@ -95,7 +95,7 @@ This tool is built with ReactJS. It requires Npm dependencies to build and run.

### How to Make Mappings

1. Make sure you have read the introduction of [IoMT FHIR Connector for Azure](https://github.com/microsoft/iomt-fhir) and understand the purpose of its [configuration](https://github.com/microsoft/iomt-fhir/blob/master/docs/Configuration.md).
1. Make sure you have read the introduction of [IoMT FHIR Connector for Azure](https://github.com/microsoft/iomt-fhir) and understand the purpose of its [configuration](https://github.com/microsoft/iomt-fhir/blob/main/docs/Configuration.md).
2. After you open the tool, you will see the empty list on the page. Now you can add a new mapping by clicking the "Add new mapping" button. You need to provide a unique name for the data type that the mapping should apply to.
![Create Mapping](./images/create-new-mapping.png)
3. Edit the device mapping. Based on your device data structure, you need to fill in the expressions for each mapping field. The syntax is the JSON path. Please check FAQs for common problems.
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