Skip to content
This repository has been archived by the owner on Mar 21, 2024. It is now read-only.

Enable Bring-your-own-Lightning-model #417

Merged
merged 128 commits into from
Apr 19, 2021
Merged
Changes from 1 commit
Commits
Show all changes
128 commits
Select commit Hold shift + click to select a range
d13e689
todo
ant0nsc Feb 8, 2021
a98bca0
dead code
ant0nsc Feb 8, 2021
45ac2e6
more notes
ant0nsc Feb 9, 2021
5fac2c0
comments
ant0nsc Feb 9, 2021
6357feb
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Feb 10, 2021
96f6019
updates
ant0nsc Feb 10, 2021
9a24671
changes to inference structure
ant0nsc Feb 23, 2021
d1b4e81
report
ant0nsc Feb 23, 2021
cd17286
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Mar 12, 2021
87c92bd
update notes
ant0nsc Mar 12, 2021
92004a1
remove overrides from loader
ant0nsc Mar 12, 2021
8d720a5
Remove buildinformation.json
ant0nsc Mar 12, 2021
4b06bc0
formatting
ant0nsc Mar 12, 2021
50e17f9
first loader test
ant0nsc Mar 12, 2021
6dbb0ff
first loader test
ant0nsc Mar 12, 2021
34b246b
notes
ant0nsc Mar 12, 2021
a8ed8a9
Loader tested and working
ant0nsc Mar 15, 2021
283afa5
docu
ant0nsc Mar 15, 2021
4983d7c
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Mar 15, 2021
a939112
more tests
ant0nsc Mar 15, 2021
10c4b0a
refactor loader
ant0nsc Mar 15, 2021
06bacbf
better tests
ant0nsc Mar 15, 2021
8928462
work in progress
ant0nsc Mar 15, 2021
2ba11fd
fixed and tested mount_or_download
ant0nsc Mar 15, 2021
7158013
Training works
ant0nsc Mar 15, 2021
3f459b7
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Mar 15, 2021
c2f666c
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Mar 16, 2021
5b1081f
updates to latest main
ant0nsc Mar 16, 2021
4a70b55
fix import problems
ant0nsc Mar 16, 2021
76be9e6
fix import problems
ant0nsc Mar 16, 2021
56fc73b
fix import problems
ant0nsc Mar 16, 2021
def1145
removing generics from loader
ant0nsc Mar 16, 2021
25268e2
DRY
ant0nsc Mar 16, 2021
81e565a
Inference is running
ant0nsc Mar 18, 2021
6ce4fb6
refactoring
ant0nsc Mar 19, 2021
3f97299
Inferenced finished and tested
ant0nsc Mar 19, 2021
e686d6b
fixing broken tests
ant0nsc Mar 19, 2021
2e07e48
param refactoring
ant0nsc Mar 22, 2021
81f8383
Many test fixes
ant0nsc Mar 22, 2021
0bbb342
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Mar 23, 2021
180d3c9
More test fixes
ant0nsc Mar 23, 2021
bb8543d
More test fixes
ant0nsc Mar 23, 2021
0e44e3f
test fixes
ant0nsc Mar 23, 2021
292655b
getting varnet module to start training
ant0nsc Mar 23, 2021
47b4670
docu
ant0nsc Mar 24, 2021
a1e88e0
Refactoring
ant0nsc Mar 25, 2021
a698b4d
test fixes
ant0nsc Mar 25, 2021
ed6351f
test fixes
ant0nsc Mar 26, 2021
f4ec27f
flake8
ant0nsc Mar 26, 2021
9d13e86
exclude
ant0nsc Mar 26, 2021
3e58360
mypy
ant0nsc Mar 26, 2021
016c737
avoid storinglogger
ant0nsc Mar 26, 2021
bddd724
changelog
ant0nsc Mar 29, 2021
9479c97
torch.count_nonzero
ant0nsc Mar 29, 2021
0928133
No longer need ModelTrainingResults
ant0nsc Mar 29, 2021
aa02a76
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Mar 29, 2021
20289f9
flake
ant0nsc Mar 29, 2021
acab458
test fixes
ant0nsc Mar 29, 2021
4407f6e
fix spawn test failure
ant0nsc Mar 29, 2021
bace860
fix for unset local dataset path in Azure
ant0nsc Mar 30, 2021
11382cd
checkout submodules
ant0nsc Mar 30, 2021
a88850c
cleanup
ant0nsc Mar 30, 2021
e8a87a1
cleanup
ant0nsc Mar 30, 2021
fa2dd8d
import error
ant0nsc Mar 30, 2021
7a4f009
remove fastmri
ant0nsc Mar 31, 2021
4f58b1c
fastMRI models runs up to inference
ant0nsc Mar 31, 2021
56d6c87
test fixes
ant0nsc Mar 31, 2021
2349fe8
tests
ant0nsc Mar 31, 2021
7eea299
test fixes
ant0nsc Mar 31, 2021
d521ec2
cleanup
ant0nsc Apr 1, 2021
27da1ca
print argv path
ant0nsc Apr 1, 2021
cfab6b0
fix argv problem
ant0nsc Apr 1, 2021
8b01564
update
ant0nsc Apr 1, 2021
1e26232
update sub
ant0nsc Apr 1, 2021
5a3a385
final model
ant0nsc Apr 1, 2021
8d2bfdb
flake
ant0nsc Apr 1, 2021
0765238
update to fastmri master
ant0nsc Apr 7, 2021
15fe1ab
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Apr 7, 2021
d564119
test fixes
ant0nsc Apr 7, 2021
87267f9
import fixes
ant0nsc Apr 7, 2021
2063383
test fixes
ant0nsc Apr 9, 2021
58a6dc6
fix import problems
ant0nsc Apr 9, 2021
193e9c9
fix checkpoint test
ant0nsc Apr 9, 2021
3231e45
test fix
ant0nsc Apr 12, 2021
88e29fa
Fix test_recover_training_mean_teacher_model
Shruthi42 Apr 12, 2021
448550d
Flake8
Shruthi42 Apr 12, 2021
b6a3575
test fix
ant0nsc Apr 12, 2021
101d42d
test fix
ant0nsc Apr 12, 2021
3cd1b17
Merge branch 'antonsc/byol' of https://github.com/microsoft/InnerEye-…
ant0nsc Apr 12, 2021
ede2829
Remove main() from patch_sampling.py
Shruthi42 Apr 12, 2021
987e83d
mypy
Shruthi42 Apr 12, 2021
9fad817
Merge branch 'antonsc/byol' of https://github.com/microsoft/InnerEye-…
Shruthi42 Apr 12, 2021
76e5f02
docu
ant0nsc Apr 12, 2021
5dae881
ensure correct seeding in tests
ant0nsc Apr 12, 2021
b744abb
fix test_invalid_trainer_args
ant0nsc Apr 13, 2021
60f5e32
fix downloading problems in AzureML
ant0nsc Apr 13, 2021
2ae170a
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Apr 13, 2021
dc01b61
adding reports for container models
ant0nsc Apr 13, 2021
59e2ca1
fixing test loss values
ant0nsc Apr 13, 2021
8758973
fix bug with running the unit tests in AzureML
ant0nsc Apr 13, 2021
c514ca0
docu, flake
ant0nsc Apr 13, 2021
ab9b4c2
mypy and flake
ant0nsc Apr 13, 2021
7988af9
downgrading mypy
ant0nsc Apr 13, 2021
4e5b7f6
test fixes
ant0nsc Apr 14, 2021
f70884f
test fixes, reduce logging noise
ant0nsc Apr 14, 2021
069ca6c
mypy and flake
ant0nsc Apr 14, 2021
731483f
simplify mypy runner
ant0nsc Apr 14, 2021
1f5afc0
remove comments
ant0nsc Apr 14, 2021
a362e70
Update InnerEye/ML/model_training.py
ant0nsc Apr 14, 2021
7f17e83
Update docs/bring_your_own_model.md
ant0nsc Apr 14, 2021
a8024d1
PR comments
ant0nsc Apr 14, 2021
ed94083
Merge branch 'antonsc/byol' of https://github.com/microsoft/InnerEye-…
ant0nsc Apr 14, 2021
b6a7d01
fixes
ant0nsc Apr 15, 2021
de15468
updated docu and design as per PR feedback.
ant0nsc Apr 15, 2021
5656489
docu and mypy
ant0nsc Apr 15, 2021
efd9231
update doc, add report test
ant0nsc Apr 16, 2021
2f4c36a
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Apr 16, 2021
268b265
HelloContainer model
ant0nsc Apr 16, 2021
8649681
HelloContainer data
ant0nsc Apr 16, 2021
422c790
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Apr 16, 2021
7e1e516
HelloWorld running
ant0nsc Apr 16, 2021
be0948b
docu
ant0nsc Apr 16, 2021
79795e0
fixes
ant0nsc Apr 16, 2021
3cde0ee
fixes
ant0nsc Apr 16, 2021
6f9e37c
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Apr 16, 2021
9df5025
updated main, PR comments
ant0nsc Apr 16, 2021
00bb084
PR comments
ant0nsc Apr 16, 2021
181302f
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc Apr 19, 2021
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Merge remote-tracking branch 'origin/main' into antonsc/byol
ant0nsc committed Mar 15, 2021

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
commit 4983d7c43e908a7cfe694dbe4310a79f00ad582f
1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -24,6 +24,7 @@ created.
- Starting an AzureML run now uses the `ScriptRunConfig` object, rather than the deprecated `Estimator` object ([#385](https://github.com/microsoft/InnerEye-DeepLearning/pull/385))
- When registering a model, the name of the Python execution environment is added as a tag. This tag is read when running inference, and the execution environment
is re-used. ([#385](https://github.com/microsoft/InnerEye-DeepLearning/pull/385))
- Upgraded to PyTorch 1.8.0, PyTorch-Lightning 1.1.8 and AzureML SDK 1.23.0 ([#411](https://github.com/microsoft/InnerEye-DeepLearning/pull/411))

### Fixed

1 change: 0 additions & 1 deletion InnerEye/Azure/azure_runner.py
Original file line number Diff line number Diff line change
@@ -20,7 +20,6 @@
from azureml.core.workspace import WORKSPACE_DEFAULT_BLOB_STORE_NAME
from azureml.data import FileDataset
from azureml.data.dataset_consumption_config import DatasetConsumptionConfig
from azureml.train.dnn import PyTorch

from InnerEye.Azure import azure_util
from InnerEye.Azure.azure_config import AzureConfig, ParserResult, SourceConfig
You are viewing a condensed version of this merge commit. You can view the full changes here.