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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 27 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 80 repositories
  • docs Public

    User-facing, web-based documentation about the NMDC

    microbiomedata/docs’s past year of commit activity
    Python 1 0 25 1 Updated Jan 3, 2025
  • metaMS Public

    GC-MS Based Metabolomics Workflow

    microbiomedata/metaMS’s past year of commit activity
    Python 4 BSD-2-Clause 0 10 1 Updated Jan 3, 2025
  • metadata-for-user-facility-template-transformations Public

    CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates

    microbiomedata/metadata-for-user-facility-template-transformations’s past year of commit activity
    Python 0 0 15 0 Updated Jan 3, 2025
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 5 107 (2 issues need help) 16 Updated Jan 3, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 9 0 161 12 Updated Jan 2, 2025
  • geoloc-tools Public
    microbiomedata/geoloc-tools’s past year of commit activity
    Python 0 0 0 0 Updated Jan 2, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 41 2 Updated Dec 30, 2024
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 27 CC0-1.0 8 362 (1 issue needs help) 8 Updated Dec 27, 2024
  • nmdc_notebook_tools Public

    A library designed to simplify various research tasks for users looking to leverage the NMDC (National Microbiome Data Collaborative) APIs. The library provides a collection of general-purpose functions that facilitate easy access, manipulation, and analysis of microbiome data.

    microbiomedata/nmdc_notebook_tools’s past year of commit activity
    Python 2 0 2 0 Updated Dec 27, 2024
  • sample-annotator Public

    NMDC Sample Annotator

    microbiomedata/sample-annotator’s past year of commit activity
    Python 5 9 38 21 Updated Dec 27, 2024
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