Merge branch 'devel' into devel

inst/pages/miaverse.qmd

@@ -122,8 +122,12 @@ The following DA methods support `(Tree)SummarizedExperiment`.
 
 ### Other relevant packages
 
-- [LinDA](https://github.com/zhouhj1994/LinDA) [@Zhou2022]
-- [vegan](https://vegandevs.github.io/vegan/) [@R_vegan]
+- [MGnifyR](https://github.com/EBI-Metagenomics/MGnifyR) for accessing and processing MGnify data in R
+    - [MGnify Notebooks](https://docs.mgnify.org/src/notebooks_list.html)
+    - [EMBL-EBI MGnify user guides and resources](https://github.com/EBI-Metagenomics/notebooks)
+- [LinDA](https://github.com/zhouhj1994/LinDA)[@Zhou2022] for differential abundance analysis
+- [vegan](https://vegandevs.github.io/vegan/) [@R_vegan] for community ecologists
+
 - [philr](http://bioconductor.org/packages/devel/bioc/html/philr.html) (@Silverman2017) phylogeny-aware phILR transformation
 - [MicrobiotaProcess](https://bioconductor.org/packages/release/bioc/html/MicrobiotaProcess.html) [@Xu2023] for the "tidy" analysis of microbiome and other ecological data
 - [Tools for Microbiome Analysis](https://microsud.github.io/Tools-Microbiome-Analysis/)