Merge pull request #770 from micro-manager/ndtiff-update #158
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| # If changes to java versions | |
| # Deploy new version of pycromanager java to maven, | |
| # and then update micro-manager ivy file and make PR | |
| # If changes to python version | |
| # await for PR to merge into new MM version | |
| # then publish new version to pypi | |
| name: Build and deploy Java and Python components of Pycro-Manager | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'java/pom.xml' | |
| - 'pycromanager/_version.py' | |
| # ensure only one instance of the script runs at a given time | |
| concurrency: PM_version_update | |
| jobs: | |
| # Use a filter to determine whether to deploy new java version | |
| check-java-version: | |
| if: ${{ github.repository == 'micro-manager/pycro-manager' }} | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pull-requests: read | |
| outputs: | |
| changed: ${{ steps.filter.outputs.changed }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: dorny/paths-filter@v2 | |
| id: filter | |
| with: | |
| filters: | | |
| changed: | |
| - 'java/pom.xml' | |
| maven-deploy: | |
| # This workflow will build a Java project with Maven | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven | |
| needs: check-java-version | |
| #if: ${{ github.repository == 'micro-manager/pycro-manager' && needs.check-java-version.outputs.changed == 'true' }} | |
| if: ${{ needs.check-java-version.outputs.changed == 'true' }} | |
| name: Deploy PycroManagerJava.jar to Sonatype OSS | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up JDK 8 | |
| uses: actions/setup-java@v3 | |
| with: | |
| java-version: 8 | |
| distribution: 'zulu' | |
| - name: Set up Apache Maven Central | |
| uses: actions/setup-java@v3 | |
| with: # running setup-java again overwrites the settings.xml | |
| java-version: 8 | |
| distribution: 'zulu' | |
| server-id: ossrh | |
| server-username: OSSRH_USERNAME | |
| server-password: OSSRH_PASSWORD | |
| gpg-private-key: ${{ secrets.MAVEN_GPG_PRIVATE_KEY }} | |
| gpg-passphrase: MAVEN_GPG_PASSPHRASE | |
| - name: Publish to Apache Maven Central | |
| run: mvn deploy --file java/pom.xml -Dgpg.passphrase=${{ secrets.MAVEN_GPG_PASSPHRASE }} | |
| env: | |
| OSSRH_USERNAME: ${{ secrets.OSSRH_USERNAME }} | |
| OSSRH_PASSWORD: ${{ secrets.OSSRH_PASSWORD }} | |
| MAVEN_GPG_PASSPHRASE: ${{ secrets.MAVEN_GPG_PASSPHRASE }} | |
| mm-update: | |
| needs: [check-java-version, maven-deploy] | |
| if: ${{ github.repository == 'micro-manager/pycro-manager' && needs.check-java-version.outputs.changed == 'true' }} | |
| name: Open a PR in micro-manager/micro-manager to update java dependencies | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| steps: | |
| # Get token for using gh CLI | |
| # https://michaelheap.com/ultimate-guide-github-actions-authentication/ | |
| - name: Get Token | |
| id: get_workflow_token | |
| uses: getsentry/action-github-app-token@v2 | |
| with: | |
| app_id: ${{ secrets.MM_PR_BOT_APP_ID }} | |
| private_key: ${{ secrets.MM_PR_BOT_PRIVATE_KEY }} | |
| - name: Checkout Micro-Manager branch | |
| uses: actions/checkout@v3 | |
| # env: | |
| # GITHUB_TOKEN: ${{ steps.get_workflow_token.outputs.token }} | |
| with: | |
| path: micro-manager | |
| repository: micro-manager/micro-manager | |
| token: ${{ steps.get_workflow_token.outputs.token }} | |
| ref: ${{ github.ref_name }} # Use matching branch | |
| - name: Checkout pycro-manager # To get the update_mm_ivy.py script | |
| uses: actions/checkout@v3 | |
| env: | |
| GITHUB_TOKEN: ${{ steps.get_workflow_token.outputs.token }} | |
| with: | |
| path: pycro-manager | |
| repository: micro-manager/pycro-manager | |
| ref: main | |
| - name: Wait for new version to be available and update ivy.xml | |
| run: | | |
| cd pycro-manager | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git config --global user.name "PycroManager-Bot" | |
| git config pull.rebase false | |
| pip install semantic_version lxml | |
| python build_automation/update_mm_ivy.py | |
| - name: commit | |
| run: | | |
| cd micro-manager | |
| # delete any errant existing version of the update branch | |
| git branch -D dependency_update_from_pycromanager 2>/dev/null || true | |
| git push origin --delete dependency_update_from_pycromanager 2>/dev/null || true | |
| git checkout -b dependency_update_from_pycromanager | |
| git commit -am "Update PycromanagerJava version (and possibly its dependencies)" | |
| - name: push | |
| run: | | |
| cd micro-manager | |
| git push --set-upstream origin dependency_update_from_pycromanager | |
| - name: create pull request wait for merge | |
| env: | |
| GITHUB_TOKEN: ${{ steps.get_workflow_token.outputs.token }} | |
| run: | | |
| cd micro-manager | |
| # Create pull request to merge into micro-manager/micro-manager main branch | |
| PR_URL=$(gh pr create -H dependency_update_from_pycromanager -B main --title 'Update Pycro-Manager and dependencies' --body 'Created by Github action') | |
| echo "Created pull request $PR_URL" | |
| # supposedly you can use --delete-branch here, but as of 2-1-23 it doesn't work | |
| gh pr merge $PR_URL --auto --merge | |
| # wait for status checks and PR to merge | |
| while true; do | |
| if gh pr checks $PR_URL --watch | grep -q "fail"; then | |
| # raise an error | |
| echo "checks failed" | |
| set -e | |
| else | |
| # The PR passed all checks in micro-manager. | |
| echo "checks passed" | |
| break | |
| fi | |
| sleep 10 # is this needed in addition to --watch? | |
| done | |
| # Block until PR merged or closed | |
| while true; do | |
| if gh pr view $PR_URL --json state | grep -q "MERGED"; then | |
| echo "success merge" | |
| break | |
| elif gh pr view $PR_URL --json state | grep -q "CLOSED"; then | |
| echo "pull request closed" | |
| break | |
| else | |
| echo "waiting on pull request status" | |
| sleep 10 | |
| fi | |
| done | |
| # Now it is safe to assume its in the nightly builds | |
| # delete the branch created for sending in the update | |
| git push origin --delete dependency_update_from_pycromanager | |
| # After java deps have updated in MM, time to check if a new python version is needed | |
| check-python-version: | |
| if: ${{ github.repository == 'micro-manager/pycro-manager' }} | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pull-requests: read | |
| outputs: | |
| changed: ${{ steps.filter.outputs.changed }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: dorny/paths-filter@v2 | |
| id: filter | |
| with: | |
| filters: | | |
| changed: | |
| - 'pycromanager/_version.py' | |
| pypi-deploy: | |
| # Once any changes to java have gone into micro-manager, a new version of PM can be deployed to PyPi | |
| needs: [check-java-version, mm-update, maven-deploy, check-python-version] | |
| name: Deploy new version to PyPi if needed | |
| # Run if | |
| # java update is complete without errors and new version is merged into MM main (or no java update) | |
| # and python version changed | |
| # weird syntax needed, see: https://github.com/actions/runner/issues/491#issuecomment-850884422 | |
| if: ${{ github.repository == 'micro-manager/pycro-manager' && always() && needs.check-python-version.outputs.changed == 'true' && !contains(needs.*.result, 'failure') && !contains(needs.*.result, 'cancelled')}} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install packaging setuptools twine wheel | |
| - name: Publish the Python package | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| twine upload dist/* | |