Moving to v1.7.0

mianalysis · Nov 22, 2024 · ec237f5 · ec237f5
1 parent 3500a2f
commit ec237f5
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Showing 26 changed files with 5,921 additions and 33 deletions.
diff --git a/mia-algorithms/pom.xml b/mia-algorithms/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-algorithms</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-algorithms</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-bonej/pom.xml b/mia-bonej/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-bonej</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-bonej</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-coordinates/pom.xml b/mia-coordinates/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-coordinates</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-coordinates</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-core/pom.xml b/mia-core/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-core</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-core</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-deepimagej/pom.xml b/mia-deepimagej/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-deepimagej</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-deepimagej</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-macros/pom.xml b/mia-macros/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-macros</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-macros</name>
     <url>https://github.com/mianalysis/mia</url>
@@ -127,13 +127,13 @@
         <dependency>
             <groupId>io.github.mianalysis</groupId>
             <artifactId>mia-core</artifactId>
-            <version>1.7.0-SNAPSHOT</version>
+            <version>1.7.0</version>
         </dependency>
 
         <dependency>
             <groupId>io.github.mianalysis</groupId>
             <artifactId>mia-modules</artifactId>
-            <version>1.7.0-SNAPSHOT</version>
+            <version>1.7.0</version>
         </dependency>
     </dependencies>
 

diff --git a/mia-modules/pom.xml b/mia-modules/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-modules</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-modules</name>
     <url>https://github.com/mianalysis/mia</url>
@@ -127,7 +127,7 @@
         <dependency>
             <groupId>io.github.mianalysis</groupId>
             <artifactId>mia-core</artifactId>
-            <version>1.7.0-SNAPSHOT</version>
+            <version>1.7.0</version>
         </dependency>
 
         <dependency>

diff --git a/mia-modules/src/main/java/io/github/mianalysis/mia/module/script/RunScript.java b/mia-modules/src/main/java/io/github/mianalysis/mia/module/script/RunScript.java
@@ -37,6 +37,7 @@
 import io.github.mianalysis.mia.object.coordinates.volume.PointOutOfRangeException;
 import io.github.mianalysis.mia.object.coordinates.volume.SpatCal;
 import io.github.mianalysis.mia.object.coordinates.volume.VolumeType;
+import io.github.mianalysis.mia.object.image.Image;
 import io.github.mianalysis.mia.object.measurements.Measurement;
 import io.github.mianalysis.mia.object.parameters.BooleanP;
 import io.github.mianalysis.mia.object.parameters.ChoiceP;
@@ -257,19 +258,29 @@ public static String getLanguageExtension(String language) {
      */
     String redirectImports(String scriptText, String extension) {
         HashMap<String, String> movedClasses = new HashMap<>();
-        movedClasses.put("io.github.sjcross.sjcommon.exceptions.IntegerOverflowException",
-                IntegerOverflowException.class.getName());
+
         movedClasses.put("io.github.sjcross.sjcommon.exceptions.PointOutOfRangeException",
                 PointOutOfRangeException.class.getName());
-        movedClasses.put("io.github.sjcross.sjcommon.object.volume.SpatCal", SpatCal.class.getName());
-        movedClasses.put("io.github.sjcross.sjcommon.object.volume.VolumeType", VolumeType.class.getName());
+        movedClasses.put("io.github.sjcross.sjcommon.object.volume.PointOutOfRangeException",                          
+                PointOutOfRangeException.class.getName());
+        movedClasses.put("io.github.sjcross.common.object.volume.PointOutOfRangeException",                          
+                PointOutOfRangeException.class.getName());
+
+        movedClasses.put("io.github.sjcross.sjcommon.exceptions.IntegerOverflowException",
+                IntegerOverflowException.class.getName());
         movedClasses.put("io.github.sjcross.common.exceptions.IntegerOverflowException",
                 IntegerOverflowException.class.getName());
-        movedClasses.put("io.github.sjcross.common.object.volume.PointOutOfRangeException",
-                PointOutOfRangeException.class.getName());
+
+        movedClasses.put("io.github.sjcross.sjcommon.object.volume.SpatCal", SpatCal.class.getName());
         movedClasses.put("io.github.sjcross.common.object.volume.SpatCal", SpatCal.class.getName());
-        movedClasses.put("io.github.sjcross.common.object.Point", Point.class.getName());
+
+        movedClasses.put("io.github.sjcross.sjcommon.object.volume.VolumeType", VolumeType.class.getName());
         movedClasses.put("io.github.sjcross.common.object.volume.VolumeType", VolumeType.class.getName());
+
+        movedClasses.put("io.github.mianalysis.mia.object.Image", Image.class.getName());
+
+        movedClasses.put("io.github.sjcross.common.object.Point", Point.class.getName());
+
         movedClasses.put("io.github.mianalysis.mia.object.Measurement", Measurement.class.getName());
 
         for (String oldLocation : movedClasses.keySet()) {

diff --git a/mia-plugin/pom.xml b/mia-plugin/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-plugin</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-plugin</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-ptbiop/pom.xml b/mia-ptbiop/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-ptbiop</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-ptbiop</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-samj/pom.xml b/mia-samj/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-samj</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-samj</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/mia-stardist/pom.xml b/mia-stardist/pom.xml
@@ -6,12 +6,12 @@
     <parent>
         <groupId>io.github.mianalysis</groupId>
         <artifactId>pom-mia</artifactId>
-        <version>1.7.0-SNAPSHOT</version>
+        <version>1.7.0</version>
     </parent>
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>mia-stardist</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>jar</packaging>
     <name>mia-stardist</name>
     <url>https://github.com/mianalysis/mia</url>

diff --git a/pom.xml b/pom.xml
@@ -12,7 +12,7 @@
 
     <groupId>io.github.mianalysis</groupId>
     <artifactId>pom-mia</artifactId>
-    <version>1.7.0-SNAPSHOT</version>
+    <version>1.7.0</version>
     <packaging>pom</packaging>
     <name>pom-mia</name>
     <url>https://github.com/mianalysis/mia</url>