new lib_type option, mix, for bams with mix of ds and ss #227
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| name: tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: sudo apt-get update;sudo apt-get install -y libbz2-dev liblzma-dev libcurl4-openssl-dev libgsl-dev samtools | |
| - name: prepare htslib | |
| run: git clone --branch=develop --recursive https://github.com/samtools/htslib.git;cd htslib; make;cd ..; | |
| - name: make | |
| run: export HTSSRC=`pwd`/htslib; make | |
| - name: make test | |
| run: make test |