Fix Layer Order

merenlab · Jan 24, 2025 · 28f62d7 · 28f62d7 · meren · Jan 24, 2025
1 parent 46944a4
commit 28f62d7
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Showing 2 changed files with 8 additions and 15 deletions.
diff --git a/anvio/data/interactive/js/constants.js b/anvio/data/interactive/js/constants.js
@@ -534,18 +534,6 @@ var named_layers = {
         'norm': 'none',
         'pretty_name': '_',
     },
-    'num_gene_clusters_in_psgc': {
-        'height': 180,
-        'color': '#ffa60d',
-        'norm': 'none',
-        'pretty_name': 'Num gene clusters in PSGC',
-    },
-    'num_genes_in_psgc': {
-        'height': 180,
-        'color': '#ffa60d',
-        'norm': 'none',
-        'pretty_name': 'Num genes in PSGC',
-    },
     'gene_types!core': {
         'height': 200,
         'color': '#440000',
@@ -582,7 +570,12 @@ var named_layers = {
     'psgc_composition': {
         'type': 'bar',
         'pretty_name': 'GCs in PSGC'
-    }
+    },
+    'number_gc_in_psgc': {
+        'height': 200,
+        'color': '#ffa60d',
+        'pretty_name': 'Num GC in PSGC'
+    },
 };
 
 named_category_colors = {

diff --git a/anvio/panops.py b/anvio/panops.py
@@ -618,7 +618,7 @@ def add_psgc_layers(self, gene_clusters_dict, item_additional_data_keys):
 
         self.add_layers_to_view(psgc_gc_counts)
         item_additional_data_keys.extend([
-            'num_gene_clusters_in_psgc',
+            'number_gc_in_psgc',
             'psgc_composition!core',
             'psgc_composition!singleton',
             'psgc_composition!accessory',
@@ -720,7 +720,7 @@ def classify_gene_types(self, gene_clusters_dict):
     def add_layers_to_view(self, psgc_gc_counts):
         """Add all PSGC layers to the view data."""
         for gene_cluster in self.view_data:
-            self.additional_view_data[gene_cluster].update({ 'num_gene_clusters_in_psgc': psgc_gc_counts.get(gene_cluster, 0) })
+            self.additional_view_data[gene_cluster].update({ 'number_gc_in_psgc': psgc_gc_counts.get(gene_cluster, 0) })
 
 
     def gen_synteny_based_ordering_of_gene_clusters(self, gene_clusters_dict):