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| Test | ||
| <!DOCTYPE html> | ||
| <html lang="en"> | ||
| <head> | ||
| <meta charset="UTF-8"> | ||
| <meta http-equiv="X-UA-Compatible" content="IE=edge"> | ||
| <meta name="viewport" content="width=device-width, initial-scale=1"> | ||
| <title>Mehran's GitHub Page</title> | ||
| <!-- Bootstrap --> | ||
| <link href="css/bootstrap-4.4.1.css" rel="stylesheet"> | ||
| </head> | ||
| <body> | ||
| <nav class="navbar navbar-expand-lg navbar-dark bg-dark"> | ||
| <a class="navbar-brand" href="#">Quick access</a> | ||
| <button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation"> | ||
| <span class="navbar-toggler-icon"></span> | ||
| </button> | ||
| <div class="collapse navbar-collapse" id="navbarSupportedContent"> | ||
| <ul class="navbar-nav mr-auto"> | ||
| <li class="nav-item active"> | ||
| <a class="nav-link" href="#">Home <span class="sr-only">(current)</span></a> | ||
| </li> | ||
| <li class="nav-item"> | ||
| <a class="nav-link" href="#class.presentation">Class presentations</a> | ||
| </li> | ||
| <li class="nav-item dropdown"> | ||
| <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false"> | ||
| Section | ||
| </a> | ||
| <div class="dropdown-menu" aria-labelledby="navbarDropdown"> | ||
| <a class="dropdown-item" href="#select.publication">Select publications</a> | ||
| <a class="dropdown-item" href="#latest.work">Latest work</a> | ||
| <a class="dropdown-item" href="#class.presentation">Class presentations</a> | ||
| <a class="dropdown-item" href="#contact">Contact</a> | ||
| </div> | ||
| </li> | ||
| </ul> | ||
| </div> | ||
| </nav> | ||
| <section> | ||
| <div class="jumbotron text-center mt-2"> | ||
| <div class="container"> | ||
| <div class="row"> | ||
| <div class="col-12"> | ||
| <h1>Mehran Karimzadeh's GitHub Page</h1> | ||
| <p>Mehran is currently a CIHR post-doctoral fellow co-supervised by Dr. Hani Goodarzi at UCSF and Dr. Bo Wang at Vector Institute for Artificial Intelligence. | ||
| He is interested in understanding the epigenetic regulation of metastatic tumours using single-cell genomics and deep learning.</p> | ||
| <p><a class="btn btn-primary btn-lg" href="KARIMZADEH_CV_202106.pdf" target="_blank" role="button">Mehran's CV »</a></p> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </section> | ||
| <section> | ||
| <div class="container"> | ||
| <div class="row"> | ||
| <div class="col-12 text-center"> | ||
| <h1 id="select.publication">Select publications </h1> | ||
| <p>The list includes peer-reviewed as well as non-peer-reviewed items where Mehran is the first author</p> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </section> | ||
| <section> | ||
| <div class="container mt-2"> | ||
| <div class="row"> | ||
| <div class="col-md-4 col-12"> | ||
| <ul class="list-unstyled"> | ||
| <li class="media"> | ||
| <img class="mr-3" src="images/pubmed-meta-image.png" alt="Generic placeholder image"> | ||
| <div class="media-body"> | ||
| <h5 class="mt-0 mb-1"><a href="https://doi.org/10.1101/2020.02.12.942755" target="_blank">HPV Epigenomics</a></h5> | ||
| Viral integration transforms chromatin to drive oncogenesis. bioRxiv 2021. | ||
| </div> | ||
| </li> | ||
| </ul> | ||
| </div> | ||
| <div class="col-md-4 col-12"> | ||
| <ul class="list-unstyled"> | ||
| <li class="media"> | ||
| <img class="mr-3" src="images/pubmed-meta-image.png" alt="Generic placeholder image"> | ||
| <div class="media-body"> | ||
| <h5 class="mt-0 mb-1"><a href="https://doi.org/10.1101/168419" target="_blank">Transcription factor prediction</a></h5> | ||
| Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome. BioRxiv 2019. | ||
| </div> | ||
| </li> | ||
| </ul> | ||
| </div> | ||
| <div class="col-md-4 col-12"> | ||
| <ul class="list-unstyled"> | ||
| <li class="media"> | ||
| <img class="mr-3" src="images/pubmed-meta-image.png" alt="Generic placeholder image"> | ||
| <div class="media-body"> | ||
| <h5 class="mt-0 mb-1"><a href="https://doi.org/10.1093/nar/gky677" target="_blank">Methylome mappability</a></h5> | ||
| Umap and Bismap: quantifying genome and methylome mappability. Nucleic Acids Research 2018. | ||
| </div> | ||
| </li> | ||
| </ul> | ||
| </div> | ||
| <div class="col-md-4 col-12"> | ||
| <ul class="list-unstyled"> | ||
| <li class="media"> | ||
| <img class="mr-3" src="images/pubmed-meta-image.png" alt="Generic placeholder image"> | ||
| <div class="media-body"> | ||
| <h5 class="mt-0 mb-1"><a href="https://dx.doi.org/10.18632%2Foncotarget.25382" target="_blank">Cancer aberration hubs</a></h5> | ||
| Aberration hubs in protein interaction networks highlight actionable targets in cancer. Oncotarget 2018. | ||
| </div> | ||
| </li> | ||
| </ul> | ||
| </div> | ||
| <div class="col-md-4 col-12"> | ||
| <ul class="list-unstyled"> | ||
| <li class="media"> | ||
| <img class="mr-3" src="images/pubmed-meta-image.png" alt="Generic placeholder image"> | ||
| <div class="media-body"> | ||
| <h5 class="mt-0 mb-1"><a href="https://doi.org/10.1093/bib/bbw134" target="_blank">Bioinformatics software documentation</a></h5> | ||
| Top considerations for creating bioinformatics software documentation. Briefings in Bioinformatics 2018. | ||
| </div> | ||
| </li> | ||
| </ul> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </section> | ||
| <section> | ||
| <div class="container"> | ||
| <div class="row"> | ||
| <div class="col-12 text-center"> | ||
| <h2 id="latest.work">Latest Work</h2> | ||
| <p>Recent publications</p> | ||
| </div> | ||
| </div> | ||
| <div class="row"> | ||
| <div class="col-md-6 col-12 text-center"> | ||
| <img class="img-fluid" src="images/iscience.png" alt=""> | ||
| <h4>Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses</h4> | ||
| <h6>Collaboration with Mossman lab, 2021</h6> | ||
| </div> | ||
| <div class="col-md-6 col-12 text-center mt-md-0 mt-2"> | ||
| <img class="img-fluid" src="images/elife.png" alt=""> | ||
| <h4>Massively multiplex single-molecule oligonucleosome footprinting</h4> | ||
| <h6>Collaboration with Ramani lab, 2020</h6> | ||
| </div> | ||
| <div class="col-md-6 col-12 text-center"> | ||
| <img class="img-fluid" src="images/biorxiv.png" alt=""> | ||
| <h4>Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease</h4> | ||
| <h6>Collaboration with Cyclica and Ryerson, 2020–2021</h6> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </section> | ||
| <hr> | ||
| <section> | ||
| <div class="container"> | ||
| <div class="row"> | ||
| <div class="col-12 text-center"> | ||
| <h1 id="class.presentation">Class presentations</h1> | ||
| <ul> | ||
| <li><a href="dnaMethylationAnalysis/dnaMethylationAnalysis.html">DNA methylation workshop</a> for Genomic Methodologies, University of Toronto</li> | ||
| <li><a href="isoformworkshop/isoformAnalysis.html">Isoform analysis workshop</a> for Genomic Methodologies course, University of Toronto</li> | ||
| <li><a href="https://jasonlerch.github.io/MBP-stats-2018">Introduction to biostatistics</a> for Department of Medical Biophysics, University of Toronto (2018)</li> | ||
| <li><a href="https://jasonlerch.github.io/MBP-stats-2019/">Introduction to biostatistics</a> for Department of Medical Biophysics, University of Toronto (2019)</li> | ||
| <li><a href="https://docs.google.com/presentation/d/e/2PACX-1vTvcG4QneCQB8bpCzM0_FFbJaYnhQyDPTEOnD3ps1-K6yicR5KZ0K3g1apU-7PQTBsVC22HmYeKoyo1/pub">Introduction to ggplot</a> for MBP Tech talks, University of Toronto</li> | ||
| <li><a href="https://mbp-tech-talks.github.io/2017-2018/intro-to-R_mehran-karimzadeh_francis-nguyen.pdf">Introduction to R</a> for MBP Tech Talks, University of Toronto</li> | ||
| </ul> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </section> | ||
| <hr> | ||
| <div class="section"> | ||
| <div class="container"> | ||
| <div class="row"> | ||
| <div class="col-md-4 col-12"> | ||
| <h3 class="text-center" id="contact">Contact information</h3> | ||
| <p>Email: m dot karimzadeh at vectorinstitute dot ai</p> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| <hr> | ||
| <footer class="text-center"> | ||
| <div class="container"> | ||
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| </div> | ||
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| </footer> | ||
| <!-- jQuery (necessary for Bootstrap's JavaScript plugins) --> | ||
| <script src="js/jquery-3.4.1.min.js"></script> | ||
| <!-- Include all compiled plugins (below), or include individual files as needed --> | ||
| <script src="js/popper.min.js"></script> | ||
| <script src="js/bootstrap-4.4.1.js"></script> | ||
| </body> | ||
| </html> |
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