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1. PlasSuite PlasSuite Public

   Scripts for plasmidome analysis

   Shell 5 1

2. MetaPathExplorer MetaPathExplorer Public

   MetaPathExplorer is a pipeline for analyzing and visualizing KEGG pathway maps (Kanehisa et al., 2002). These pathways are produced from high quality reads or contigs/scaffolds (metagenomes or SCs)…

   HTML 1 1

3. AccNetPhylA AccNetPhylA Public

   This Perl script AccNetPhylA (Accessory Constellation Network with Phylogenetic Analysis) takes up most of the analysis of AccNET (Accessory Constellation Network) (Val F. Lanza et al., 2016) by re…

   Perl 1 1

4. HpC_to_vehicle HpC_to_vehicle Public

   The perl script HpC_to_vehicle retrieves the results of the perl script AccNetPhylA (files to visualize the networks, multiple alignment of Muscle, phylogenetic results of PHYLIP, ...) to create Hp…

   Prolog 1

5. MICROSTORE_MetaT-MetaB_Monjot_2023 MICROSTORE_MetaT-MetaB_Monjot_2023 Public

   Workflow to reproduce analysis conduced in Monjot et al., 2023

   R 1 1

6. PANAM2 PANAM2 Public

   PANAM/PANAM2 is a pipeline for depicting the microbial community by implementing a phylogenetic approach for the annotation of the gene coding for 16S and 18S rRNA.

   Shell