Adjust Doxygen settings; especially TYPEDEF_HIDES_STRUCT=NO

Doxyfile

@@ -195,7 +195,7 @@ SHORT_NAMES            = NO
 # description.)
 # The default value is: NO.
 
-JAVADOC_AUTOBRIEF      = NO
+JAVADOC_AUTOBRIEF      = YES
 
 # If the JAVADOC_BANNER tag is set to YES then doxygen will interpret a line
 # such as
@@ -244,7 +244,7 @@ SEPARATE_MEMBER_PAGES  = NO
 # uses this value to replace tabs by spaces in code fragments.
 # Minimum value: 1, maximum value: 16, default value: 4.
 
-TAB_SIZE               = 4
+TAB_SIZE               = 8
 
 # This tag can be used to specify a number of aliases that act as commands in
 # the documentation. An alias has the form:
@@ -434,7 +434,7 @@ INLINE_SIMPLE_STRUCTS  = NO
 # types are typedef'ed and only the typedef is referenced, never the tag name.
 # The default value is: NO.
 
-TYPEDEF_HIDES_STRUCT   = YES
+TYPEDEF_HIDES_STRUCT   = NO
 
 # The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
 # cache is used to resolve symbols given their name and scope. Since this can be
@@ -485,7 +485,7 @@ EXTRACT_PACKAGE        = NO
 # included in the documentation.
 # The default value is: NO.
 
-EXTRACT_STATIC         = YES
+EXTRACT_STATIC         = NO
 
 # If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined
 # locally in source files will be included in the documentation. If set to NO,
@@ -518,7 +518,7 @@ EXTRACT_ANON_NSPACES   = NO
 # section is generated. This option has no effect if EXTRACT_ALL is enabled.
 # The default value is: NO.
 
-HIDE_UNDOC_MEMBERS     = NO
+HIDE_UNDOC_MEMBERS     = YES
 
 # If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
 # undocumented classes that are normally visible in the class hierarchy. If set
@@ -823,7 +823,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = . src src/lmic src/hal src/se/i src/se/drivers/default
+INPUT                  = . src src/lmic src/aes src/hal src/se/i src/se/drivers/default
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -1009,13 +1009,13 @@ STRIP_CODE_COMMENTS    = YES
 # entity all documented functions referencing it will be listed.
 # The default value is: NO.
 
-REFERENCED_BY_RELATION = NO
+REFERENCED_BY_RELATION = YES
 
 # If the REFERENCES_RELATION tag is set to YES then for each documented function
 # all documented entities called/used by that function will be listed.
 # The default value is: NO.
 
-REFERENCES_RELATION    = NO
+REFERENCES_RELATION    = YES
 
 # If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
 # to YES then the hyperlinks from functions in REFERENCES_RELATION and
@@ -1246,7 +1246,7 @@ HTML_COLORSTYLE_GAMMA  = 80
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_TIMESTAMP         = NO
+HTML_TIMESTAMP         = YES
 
 # If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
 # documentation will contain a main index with vertical navigation menus that
@@ -1265,7 +1265,7 @@ HTML_DYNAMIC_MENUS     = YES
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_DYNAMIC_SECTIONS  = NO
+HTML_DYNAMIC_SECTIONS  = YES
 
 # With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
 # shown in the various tree structured indices initially; the user can expand
@@ -1292,15 +1292,15 @@ HTML_INDEX_NUM_ENTRIES = 100
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-GENERATE_DOCSET        = NO
+GENERATE_DOCSET        = YES
 
 # This tag determines the name of the docset feed. A documentation feed provides
 # an umbrella under which multiple documentation sets from a single provider
 # (such as a company or product suite) can be grouped.
 # The default value is: Doxygen generated docs.
 # This tag requires that the tag GENERATE_DOCSET is set to YES.
 
-DOCSET_FEEDNAME        = "Doxygen generated docs"
+DOCSET_FEEDNAME        = "Arduio LMIC docs"
 
 # This tag specifies a string that should uniquely identify the documentation
 # set bundle. This should be a reverse domain-name style string, e.g.
@@ -1407,7 +1407,7 @@ QCH_FILE               =
 # The default value is: org.doxygen.Project.
 # This tag requires that the tag GENERATE_QHP is set to YES.
 
-QHP_NAMESPACE          = org.doxygen.Project
+QHP_NAMESPACE          = com.mcci.catena.arduino-lmic
 
 # The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt
 # Help Project output. For more information please see Qt Help Project / Virtual
@@ -1494,7 +1494,7 @@ DISABLE_INDEX          = NO
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-GENERATE_TREEVIEW      = NO
+GENERATE_TREEVIEW      = YES
 
 # The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
 # doxygen will group on one line in the generated HTML documentation.