Activate Setup R dependencies #4
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| --- | |
| name: Simple workflow | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - synchronize | |
| - reopened | |
| - ready_for_review | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| env: | |
| # additional flags for `R CMD CHECK` | |
| EXTRA_CHECK_FLAGS: "--no-manual --no-vignettes" | |
| # additional environmental vars for `R CMD CHECK` | |
| # see manual here: https://rstudio.github.io/r-manuals/r-ints/Tools.html | |
| _R_CHECK_TESTS_NLINES_: 0 | |
| _R_CHECK_VIGNETTES_NLINES_: 0 | |
| jobs: | |
| # First job. | |
| hello-world-from-r: | |
| name: Hello, world! | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Setup R 🔧 | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Hello world! 💬 | |
| run: cat(paste0("Hello ", Sys.getenv("NAME"), "! 👋")) | |
| shell: Rscript {0} | |
| env: | |
| NAME: "mattkorb" | |
| # Second job - by default jobs will run in parallel, unless some dependencies | |
| # are introduced between them. | |
| build-and-check: | |
| name: Build R package | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo 🛎 | |
| # We're using an official GitHub Action. | |
| uses: actions/[email protected] | |
| with: | |
| # Action inputs (arguments/parameters). | |
| # In this case we clone the repository to the directory called the same | |
| # as the repository name. | |
| path: ${{ github.event.repository.name }} | |
| - name: Setup R 🔧 | |
| if: true | |
| # We're using a third-party GitHub Action. | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Hello from R! 💬 | |
| run: cat("Hello from R! 👋") | |
| shell: Rscript {0} | |
| - name: Setup R dependencies 🔧 | |
| # We're using a third-party GitHub Action. | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| working-directory: ${{ github.event.repository.name }} | |
| - name: Installed packages 📦 | |
| run: rownames(installed.packages()) | |
| shell: Rscript {0} | |
| # Get package name and version from DESCRIPTION so that we'll know | |
| # what's the name of the tar.gz file with the built package. | |
| # pkgbuild is set as an output which can be accessed by subsequent steps. | |
| - name: Get package name 📦 | |
| id: package-name | |
| run: | | |
| PKGBUILD="$(Rscript -e 'cat(sprintf("%s_%s.tar.gz",(dcf <- read.dcf("DESCRIPTION"))[,"Package"], dcf[,"Version"]))')" | |
| echo "PKGBUILD = $PKGBUILD" | |
| echo "pkgbuild=$PKGBUILD" >> $GITHUB_OUTPUT | |
| shell: bash | |
| working-directory: ${{ github.event.repository.name }} | |
| # Build a package stored in a directory called ${{ github.event.repository.name }} | |
| # --no-manual --no-build-vignettes because this requires LaTeX. | |
| - name: Build R package 🏗 | |
| run: | | |
| R CMD build --no-manual --no-build-vignettes ${{ github.event.repository.name }} | |
| ls -l | |
| shell: bash | |
| # Check `.tar.gz` package built in previous step. | |
| # --no-manual --no-vignettes because this requires LaTeX. | |
| - name: Check R package 🏁 | |
| run: | | |
| env | grep -E '^_R' | |
| echo "Let's run R CMD check..." | |
| R CMD check ${EXTRA_CHECK_FLAGS} ${{ steps.package-name.outputs.pkgbuild }} | |
| shell: bash | |
| - name: Upload logs artifact 🗞️ | |
| uses: actions/upload-artifact@v4 | |
| if: false | |
| with: | |
| path: | | |
| ${{ github.event.repository.name }}.Rcheck/*00install.out | |
| ${{ github.event.repository.name }}.Rcheck/*00check.log | |
| ${{ github.event.repository.name }}.Rcheck/*00build.out | |
| ${{ github.event.repository.name }}.Rcheck/*-Ex.Rout | |
| ${{ github.event.repository.name }}.Rcheck/tests/testthat.Rout | |
| ${{ github.event.repository.name }}.Rcheck/tests/testthat.Rout.fail | |
| name: check-logs-${{ github.event.repository.name }} | |
| - name: Get `.tar.gz` file name | |
| if: false | |
| id: tar-gz | |
| # Use our custom action. | |
| uses: user-workshop-cicd/action-example@main | |
| with: | |
| filename-beginning: ${{ github.event.repository.name }} | |
| # Upload `.tar.gz` package as an artifact so it can be downloaded. | |
| - name: Upload package build ⤴ | |
| if: false | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| # Output of the custom action from the previous step | |
| # are inputs of this action. | |
| path: ${{ steps.tar-gz.outputs.full-filename }} | |
| name: ${{ steps.tar-gz.outputs.full-filename }} | |
| call-reusable-workflow: | |
| name: Reusable workflow ♻️ | |
| uses: user-workshop-cicd/r.pkg.template/.github/workflows/sample-reusable-workflow.yaml@main | |
| with: | |
| name: Octocat |