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R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences

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tRap

tRap is an R package that can be used to calculate the predicted binding affinity of a transcription factor to a DNA or RNA sequence. It implements the model described in Roider et al 2007.

Installation

You will need the latest version of devtools:

install.packages("devtools")

Then you can install the latest development version of tRap from github with:

devtools::install_github("matthuska/tRap")

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R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences

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