R Scripts used for the analysis of Landry et al. 2021: Spruce budworm bacterial communities vary among sites and host tree species in a boreal landscape

Landry_biogeo_dada2_sequence_processing.R is the script used to process the raw sequences into community and taxonomy tables with DADA2

Landry_biogeo_community_analysis.R is the script used to generate the results in the article from community, taxonomy and metadata tables