Sample pickle #31
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Sample pickle #31
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Codecov Report
@@ Coverage Diff @@
## sample #31 +/- ##
==========================================
- Coverage 79.75% 79.72% -0.03%
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Files 23 23
Lines 5325 5333 +8
==========================================
+ Hits 4247 4252 +5
- Misses 1078 1081 +3
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mathematicalmichael
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Jan 12, 2020
* adding TEMPORARY files for CI. * adding support for more types of kwd args. * added support for tuple and list. * linting and io ptr setting. * resiliency to overwriting observed distribution. * choose outputs method * linting. * whitespace. * fix tests with sample. * SET_IO PTR REMOVED FROM PROB * clean up lines. * scaffolding for distributions * Revert "clean up lines." This reverts commit 4db6347. * Revert "SET_IO PTR REMOVED FROM PROB" This reverts commit 40a7267. * Revert "Revert "SET_IO PTR REMOVED FROM PROB"" This reverts commit 862f70b. * fixed test. * Revert "Revert "clean up lines."" This reverts commit 845e77f. * domain inference and rvs support * support for kde rvs * typo. * self missing * whitespace. * ANSATZ CHANGE IN PROB * hasattr fix. * typo caused tests to fail. * pdf and cdf now handle KDE object. * MC estimate for probabilities. * TESTS PASS FOR EMULATED PROBS. * silence the hounds. * travis simplified down. * passing tests and several added functions. * tests passing, WIP * WIP * tests passing and whole ton of code added. * linting * BUGS FIXED FOR SAMPLING. * linting. * minor bugfixes. * linting. * bug fixes. * bug fixes and architecture changes * scipy version lock. * sampling tests begun. * linting. * manual linting. * docstrings. * local overwriting tests now pass. * WIP. NEEDS REFACTOR. * TESTS PASSING FINALLY. * removed redundant method. * test passing and inverse problem being solved correctly. * changes so tests pass in higher dimensions! * no longer does setting the observed overwrite the reference value. must set it explictly. * tests failing for dimensions both == 1. * tests now pass in all the dimensions. * nonrepeated data-driven mode first passing test. * caught typo. * tests now passing, likelihood working properly. * travis file matplotlib re-added for 2.7 to pass, re-aligned setup file for comparison class that is being added to master. * cover. * linting. * scipy import for (still untested) noise-setting. * resolving some hound-found issues. need more tests for loss function. * moved line incorrectly. * linting. * made std test more robust to sizes. * removed non-ASCII character from test docs so that tests would pass in python 2.7 * better coverage and tests. * coverage up to 77 * linting. * to-do note. * linting. * fix bug and more linting. * fixed failing tests due to typos. * fixed broken tests and improved coverage ever so slightly. * repeated tests pass. * copyright notice. * addressing some linting issues. * line overflows. * info on data driven status from predited. * linting. * linting. * fix unused variables. * typo. * fixed typo and some line overflows. * adding reference value tests. * autopep linting. * dimensions fix in basicSampling test. * WIP * added successful test for add_data * fix inheritance tests. * passing tests for adding data with reference parameter * passing tests. * fix typo. * attempting to fix broken test. * setup incremented and re-styled to match comparison branch. * fixed some coverage and deprecation. * linting. * fixed behavior of set_data * linting. * adding data tests. * another test for calcP. * attempt to address coverage in calculateError. * added methods to aid compatibility with old approach. * coverage for slicing functions. * more tests. * linting. * attempt to fix broken build. * likelihood test revision. * set predicted for likelihood. * refactor setting data. * removed test for calculateError * fixed parallel generation of samples. * remove pushforward approximation in test. * revert test. * serial now loads distribution information. * distribution loading and saving now works in mat files both in parallel and serial * refactored set_initial * linting and cleanup. * fixed test by using appropriate default value. * fixed backward incompatible change. * vim files added to gitignore. * fixed repeated sampling test to take any length data. * linting. * more aggressive linting. * linting (manually) * linting (autopep) * sed replacement for loggin.warn into warning. * linting after warn. * full sweep autolinting. * autolint * re-added disc.local_to_global. all tests except sample.py pass * more tests pass but some still fail. * copy setup. * overwrite den with None when generating samples. * accept/reject WIP. * typo. * linting. * travis testing temporarily. * stylistic changes. * WIP on parallel pdf. * adding test file. * small changes. * kde tests WIP * fixed tests. * autopep linting. * travis. * test commit * linting, comments. * STABLE. Tests Pass in parallel. needs cleanup. * reincluded test. * removed extraneous file added by accident. * autolinting. * whitespace. * line indent. * whitespacing and typos * silence the hounds. manual linting. * manual linting. * whitespace. * autopep linting. * Sample pickle (#31) * pickling. * unlocked scipy version once pickle replaced sio.load/savemat * adding back in passing tests. * cleanup. * dont skip test now. * manual linting. * manual linting. * manual linting. * manual linting. * drop 2.7 tests. * try to get travis passing. * fix some testing bugs. * found random sampling ignored domain in bsam. * typo. * hotfix for compare * bugfix comparison. * hotfix.
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this PR turns
sio.loadmatandsio.savemat(fromscipy.io) into apickleprocess.this allows SciPy to get upgraded and addresses UT-CHG#360 and UT-CHG#357 and UT-CHG#366