update dependencies for emmet-core (ubuntu-latest/py3.11)

materialsproject · Dec 3, 2024 · 2a5f0ea · 2a5f0ea
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commit 2a5f0ea
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diff --git a/emmet-core/requirements/ubuntu-latest_py3.11.txt b/emmet-core/requirements/ubuntu-latest_py3.11.txt
@@ -10,11 +10,11 @@ certifi==2024.8.30
     # via requests
 charset-normalizer==3.4.0
     # via requests
-contourpy==1.3.0
+contourpy==1.3.1
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
-fonttools==4.54.1
+fonttools==4.55.1
     # via matplotlib
 idna==3.10
     # via requests
@@ -24,7 +24,7 @@ kiwisolver==1.4.7
     # via matplotlib
 latexcodec==3.0.0
     # via pybtex
-matplotlib==3.9.2
+matplotlib==3.9.3
     # via pymatgen
 monty==2024.10.21
     # via
@@ -60,15 +60,15 @@ pybtex==0.24.0
     # via
     #   emmet-core (setup.py)
     #   pymatgen
-pydantic==2.9.2
+pydantic==2.10.3
     # via
     #   emmet-core (setup.py)
     #   pydantic-settings
-pydantic-core==2.23.4
+pydantic-core==2.27.1
     # via pydantic
 pydantic-settings==2.6.1
     # via emmet-core (setup.py)
-pymatgen==2024.10.29
+pymatgen==2024.11.13
     # via emmet-core (setup.py)
 pyparsing==3.2.0
     # via matplotlib
@@ -104,7 +104,7 @@ tabulate==0.9.0
     # via pymatgen
 tenacity==9.0.0
     # via plotly
-tqdm==4.67.0
+tqdm==4.67.1
     # via pymatgen
 typing-extensions==4.12.2
     # via

diff --git a/emmet-core/requirements/ubuntu-latest_py3.11_extras.txt b/emmet-core/requirements/ubuntu-latest_py3.11_extras.txt
@@ -4,9 +4,9 @@
 #
 #    pip-compile --all-extras --output-file=requirements/ubuntu-latest_py3.11_extras.txt
 #
-aiohappyeyeballs==2.4.3
+aiohappyeyeballs==2.4.4
     # via aiohttp
-aiohttp==3.10.10
+aiohttp==3.11.9
     # via fsspec
 aioitertools==0.12.0
     # via maggma
@@ -26,11 +26,11 @@ attrs==24.2.0
     #   jsonlines
     #   jsonschema
     #   referencing
-bcrypt==4.2.0
+bcrypt==4.2.1
     # via paramiko
-boto3==1.35.57
+boto3==1.35.73
     # via maggma
-botocore==1.35.57
+botocore==1.35.73
     # via
     #   boto3
     #   s3transfer
@@ -54,11 +54,11 @@ click==8.1.7
     #   mkdocstrings
 colorama==0.4.6
     # via griffe
-contourpy==1.3.0
+contourpy==1.3.1
     # via matplotlib
-coverage[toml]==7.6.4
+coverage[toml]==7.6.8
     # via pytest-cov
-cryptography==43.0.3
+cryptography==44.0.0
     # via paramiko
 csscompressor==0.9.5
     # via mkdocs-minify-plugin
@@ -78,7 +78,7 @@ dnspython==2.7.0
     # via
     #   maggma
     #   pymongo
-emmet-core==0.84.3rc3
+emmet-core==0.84.3rc4
     # via mp-api
 fasteners==0.19
     # via mdanalysis
@@ -89,7 +89,7 @@ filelock==3.16.1
     #   virtualenv
 flake8==7.1.1
     # via emmet-core (setup.py)
-fonttools==4.54.1
+fonttools==4.55.1
     # via matplotlib
 frozenlist==1.5.0
     # via
@@ -110,13 +110,13 @@ h5py==3.12.1
     # via phonopy
 htmlmin2==0.1.13
     # via mkdocs-minify-plugin
-identify==2.6.2
+identify==2.6.3
     # via pre-commit
 idna==3.10
     # via
     #   requests
     #   yarl
-imageio==2.36.0
+imageio==2.36.1
     # via scikit-image
 inflect==7.4.0
     # via robocrys
@@ -156,7 +156,7 @@ lazy-loader==0.4
     # via scikit-image
 lightning==2.4.0
     # via matgl
-lightning-utilities==0.11.8
+lightning-utilities==0.11.9
     # via
     #   lightning
     #   pytorch-lightning
@@ -184,10 +184,11 @@ matgl==1.1.3
     # via emmet-core (setup.py)
 matminer==0.9.3
     # via robocrys
-matplotlib==3.9.2
+matplotlib==3.9.3
     # via
     #   ase
     #   mdanalysis
+    #   pathsimanalysis
     #   phonopy
     #   pymatgen
     #   seaborn
@@ -196,10 +197,15 @@ mccabe==0.7.0
     # via flake8
 mda-xdrlib==0.2.0
     # via mdanalysis
-mdanalysis==2.7.0
+mdahole2==0.5.0
+    # via mdanalysis
+mdanalysis==2.8.0
     # via
     #   emmet-core (setup.py)
+    #   mdahole2
+    #   pathsimanalysis
     #   solvation-analysis
+    #   waterdynamics
 mergedeep==1.3.4
     # via
     #   mkdocs
@@ -239,7 +245,7 @@ mkdocstrings-python==1.12.2
     # via mkdocstrings
 mmtf-python==1.1.3
     # via mdanalysis
-mongomock==4.2.0.post1
+mongomock==4.3.0
     # via maggma
 monty==2024.10.21
     # via
@@ -253,7 +259,7 @@ monty==2024.10.21
     #   robocrys
 more-itertools==10.5.0
     # via inflect
-mp-api==0.42.2
+mp-api==0.43.0
     # via robocrys
 mp-pyrho==0.4.5
     # via pymatgen-analysis-defects
@@ -305,6 +311,7 @@ numpy==1.26.4
     #   monty
     #   mrcfile
     #   pandas
+    #   pathsimanalysis
     #   patsy
     #   phonopy
     #   pymatgen
@@ -324,6 +331,7 @@ numpy==1.26.4
     #   symfc
     #   tifffile
     #   torchmetrics
+    #   waterdynamics
 nvidia-cublas-cu12==12.4.5.8
     # via
     #   nvidia-cudnn-cu12
@@ -358,7 +366,7 @@ nvidia-nvjitlink-cu12==12.4.127
     #   torch
 nvidia-nvtx-cu12==12.4.127
     # via torch
-orjson==3.10.11
+orjson==3.10.12
     # via maggma
 packaging==24.2
     # via
@@ -387,11 +395,13 @@ pandas==2.2.3
     #   statsmodels
 paramiko==3.5.0
     # via sshtunnel
+pathsimanalysis==1.2.0
+    # via mdanalysis
 pathspec==0.12.1
     # via mkdocs
-patsy==0.5.6
+patsy==1.0.1
     # via statsmodels
-phonopy==2.30.0
+phonopy==2.31.2
     # via matcalc
 pillow==11.0.0
     # via
@@ -412,8 +422,10 @@ pluggy==1.5.0
     # via pytest
 pre-commit==4.0.1
     # via emmet-core (setup.py)
-propcache==0.2.0
-    # via yarl
+propcache==0.2.1
+    # via
+    #   aiohttp
+    #   yarl
 psutil==6.1.0
     # via
     #   custodian
@@ -432,14 +444,14 @@ pycodestyle==2.12.1
     #   flake8
 pycparser==2.22
     # via cffi
-pydantic==2.9.2
+pydantic==2.10.3
     # via
     #   emmet-core
     #   emmet-core (setup.py)
     #   maggma
     #   matgl
     #   pydantic-settings
-pydantic-core==2.23.4
+pydantic-core==2.27.1
     # via pydantic
 pydantic-settings==2.6.1
     # via
@@ -454,7 +466,7 @@ pyflakes==3.2.0
     # via flake8
 pygments==2.18.0
     # via mkdocs-material
-pymatgen==2024.10.29
+pymatgen==2024.11.13
     # via
     #   chgnet
     #   emmet-core
@@ -486,7 +498,7 @@ pynacl==1.5.0
     # via paramiko
 pyparsing==3.2.0
     # via matplotlib
-pytest==8.3.3
+pytest==8.3.4
     # via
     #   emmet-core (setup.py)
     #   pytest-cov
@@ -539,7 +551,7 @@ requests==2.32.3
     #   torchdata
 robocrys==0.2.10
     # via emmet-core (setup.py)
-rpds-py==0.21.0
+rpds-py==0.22.1
     # via
     #   jsonschema
     #   referencing
@@ -552,7 +564,7 @@ ruamel-yaml==0.18.6
     #   robocrys
 ruamel-yaml-clib==0.2.12
     # via ruamel-yaml
-s3transfer==0.10.3
+s3transfer==0.10.4
     # via boto3
 scikit-image==0.24.0
     # via pymatgen-analysis-defects
@@ -564,6 +576,7 @@ scipy==1.14.1
     #   dgl
     #   griddataformats
     #   mdanalysis
+    #   pathsimanalysis
     #   phonopy
     #   pymatgen
     #   robocrys
@@ -582,7 +595,6 @@ shapely==2.0.6
     # via pymatgen-analysis-alloys
 six==1.16.0
     # via
-    #   patsy
     #   pybtex
     #   python-dateutil
 smart-open==7.0.5
@@ -602,7 +614,7 @@ sshtunnel==0.4.0
     # via maggma
 statsmodels==0.14.4
     # via solvation-analysis
-symfc==1.1.5
+symfc==1.1.6
     # via phonopy
 sympy==1.13.1
     # via
@@ -631,13 +643,13 @@ torchdata==0.7.1
     # via
     #   dgl
     #   matgl
-torchmetrics==1.5.2
+torchmetrics==1.6.0
     # via
     #   lightning
     #   pytorch-lightning
-tornado==6.4.1
+tornado==6.4.2
     # via livereload
-tqdm==4.67.0
+tqdm==4.67.1
     # via
     #   dgl
     #   lightning
@@ -652,7 +664,7 @@ typeguard==4.4.1
     # via inflect
 types-requests==2.32.0.20241016
     # via emmet-core (setup.py)
-types-setuptools==75.3.0.20241107
+types-setuptools==75.6.0.20241126
     # via emmet-core (setup.py)
 typing-extensions==4.12.2
     # via
@@ -679,17 +691,19 @@ urllib3==2.2.3
     #   requests
     #   torchdata
     #   types-requests
-virtualenv==20.27.1
+virtualenv==20.28.0
     # via pre-commit
 watchdog==6.0.0
     # via mkdocs
+waterdynamics==1.2.0
+    # via mdanalysis
 wcmatch==10.0
     # via mkdocs-awesome-pages-plugin
 wincertstore==0.2.1
     # via emmet-core (setup.py)
-wrapt==1.16.0
+wrapt==1.17.0
     # via smart-open
-yarl==1.17.1
+yarl==1.18.3
     # via aiohttp
 
 # The following packages are considered to be unsafe in a requirements file: