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  1. Contemporary_Syphilis_Lineages_2021 Contemporary_Syphilis_Lineages_2021 Public

    2021 Analysis of Global Treponema pallidum subspecies pallidum genomic diversity, distribution and lineage dynamics.

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  2. Global_Syphilis_Phylo_2019 Global_Syphilis_Phylo_2019 Public

    Scripts and Source data from 2019 Global Syphilis Phylogenomics and Macrolide resistance project

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  3. HSV1_recombination_selective_constraints HSV1_recombination_selective_constraints Public

    Raw data and code from Lassalle, Beale, et al "Whole genome sequencing of Herpes Simplex Virus 1 directly from cerebrospinal fluid reveals selective constraints in neurotropic viruses"

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  4. Lihir_Treponema_2020 Lihir_Treponema_2020 Public

    Novel scripts for analysis of Treponema pallidum genomes from Lihir, Papua New Guinea (Beale 2020)

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  5. Syphilis_Genomic_Epi_England_2012-2018 Syphilis_Genomic_Epi_England_2012-2018 Public

    Genomic and epidemiological analysis of Treponema pallidum genomes from UK (English) patients, 2012-2018.

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