Search and download Ensembl data such as genome assemblies and gene annotations
This program will produce a tabular-like format with the metadata for the genomes matching user criteria. It may also download desired data to a local folder.
Install through conda:
conda install -c mmariotti ensembl_assembly
Or, alternatively, through pip:
pip install ensembl_assembly
By default, the program will show information for all available genome assemblies (most recent release). To see options, run with:
ensembl_assembly.py -h
- pandas
- easyterm
These are automatically installed through the conda or pip installation procedure.