Now longest diploid scaffold is in hap2 - this should make chrY to be…

… in hap1
marbl · Aug 26, 2024 · e8e7972 · e8e7972
1 parent f138231
commit e8e7972
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/scripts/scaffolding/scaffold_graph.py b/src/scripts/scaffolding/scaffold_graph.py
@@ -824,7 +824,7 @@ def fixHaploidNames(self, paths: path_storage.PathStorage):
 
         large_haploid_info = []
         reassigned = 0
-        reassigning_hap_id = 1
+        reassigning_hap_id = 2
         not_connected_hap_assign = 0
         for i in range (0, len(large_haploid_ids)):
             path_id = large_haploid_ids[i]