make files - refresh sssom (#204)

* make files - refresh sssom * Updating the contexts Co-authored-by: Harshad Hegde <[email protected]>
mapping-commons · Feb 14, 2022 · 52ad5ae · 52ad5ae
1 parent 83b6038
commit 52ad5ae
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Showing 11 changed files with 584 additions and 303 deletions.
diff --git a/Makefile b/Makefile
@@ -1,5 +1,5 @@
 PYTHON=python
-DEFAULT_PREFIX_MAP="https://raw.githubusercontent.com/bioregistry/bioregistry/main/docs/_data/contexts/obo_synonyms.context.jsonld"
+DEFAULT_PREFIX_MAP="https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/obo_synonyms.context.jsonld"
 SSSOM_PY="https://raw.githubusercontent.com/mapping-commons/sssom/master/sssom/sssom.py"
 SSSOM_YAML="https://raw.githubusercontent.com/mapping-commons/sssom/master/sssom/model/schema/sssom.yaml"
 SSSOM_JSON_SCHEMA="https://raw.githubusercontent.com/mapping-commons/sssom/master/sssom/jsonschema/sssom.schema.json"
@@ -43,6 +43,7 @@ sssom/internal_context.py: schema/sssom.context.jsonld
 	echo "\"\"\"This module contains an autogenerated copy of the internal SSSOM context.\"\"\"" > $@
 	echo "" >> $@
 	echo "# This is autogenerated and super hacky." >> $@
+	echo "multivalued_slots = [\"match_type\", \"creator_id\", \"creator_label\", \"author_id\", \"author_label\", \"reviewer_id\", \"reviewer_label\", \"license\", \"mapping_set_source\", \"subject_match_field\", \"object_match_field\", \"match_string\", \"subject_preprocessing\", \"object_preprocessing\",\"see_also\",]"  >> $@
 	echo "sssom_context = \"\"\""  >> $@
 	cat $< >> $@
 	echo "\"\"\""  >> $@

diff --git a/schema/sssom.context.jsonld b/schema/sssom.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from sssom.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-10-11 20:25\n    Schema: sssom\n    \n    id: http://w3id.org/sssom/schema/\n    description: Datamodel for Simple Standard for Sharing Ontology Mappings (SSSOM)\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from sssom.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2022-02-14T15:33:37\n    Schema: sssom\n    metamodel version: 1.7.0\n    model version: None\n    \n    id: http://w3id.org/sssom/schema/\n    description: Datamodel for Simple Standard for Sharing Ontology Mappings (SSSOM)\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "Orphanet": {
          "@id": "http://www.orpha.net/ORDO/Orphanet_",
@@ -23,7 +23,7 @@
       "sssom": "http://w3id.org/sssom/",
       "@vocab": "http://w3id.org/sssom/",
       "author_id": {
-         "@type": "@id",
+         "@type": "rdfs:Resource",
          "@id": "pav:authoredBy"
       },
       "comment": {
@@ -33,7 +33,7 @@
          "@type": "xsd:double"
       },
       "creator_id": {
-         "@type": "@id",
+         "@type": "rdfs:Resource",
          "@id": "dc:creator"
       },
       "license": {
@@ -62,12 +62,15 @@
          "@type": "@id"
       },
       "mapping_set_source": {
-         "@type": "@id",
+         "@type": "rdfs:Resource",
          "@id": "prov:wasDerivedFrom"
       },
       "mapping_set_version": {
          "@id": "owl:versionInfo"
       },
+      "mapping_source": {
+         "@type": "rdfs:Resource"
+      },
       "mappings": {
          "@type": "@id"
       },
@@ -88,16 +91,11 @@
          }
       },
       "object_id": {
-         "@type": "@id",
+         "@type": "rdfs:Resource",
          "@id": "owl:annotatedTarget"
       },
       "object_match_field": {
-         "@context": {
-            "@vocab": "@null",
-            "text": "skos:notation",
-            "description": "skos:prefLabel",
-            "meaning": "@id"
-         }
+         "@type": "rdfs:Resource"
       },
       "object_preprocessing": {
          "@context": {
@@ -111,36 +109,36 @@
          "@type": "@id"
       },
       "predicate_id": {
-         "@type": "@id",
+         "@type": "rdfs:Resource",
          "@id": "owl:annotatedProperty"
       },
+      "predicate_modifier": {
+         "@context": {
+            "@vocab": "@null",
+            "text": "skos:notation",
+            "description": "skos:prefLabel",
+            "meaning": "@id"
+         }
+      },
       "publication_date": {
          "@type": "xsd:date",
          "@id": "dc:created"
       },
       "reviewer_id": {
-         "@type": "@id"
+         "@type": "rdfs:Resource"
       },
       "see_also": {
          "@id": "rdfs:seeAlso"
       },
-      "semantic_similarity_measure": {
-         "@type": "@id"
-      },
       "semantic_similarity_score": {
          "@type": "xsd:double"
       },
       "subject_id": {
-         "@type": "@id",
+         "@type": "rdfs:Resource",
          "@id": "owl:annotatedSource"
       },
       "subject_match_field": {
-         "@context": {
-            "@vocab": "@null",
-            "text": "skos:notation",
-            "description": "skos:prefLabel",
-            "meaning": "@id"
-         }
+         "@type": "rdfs:Resource"
       },
       "subject_preprocessing": {
          "@context": {
@@ -153,9 +151,6 @@
       "subject_source": {
          "@type": "@id"
       },
-      "subject_source_version": {
-         "@type": "@id"
-      },
       "Mapping": {
          "@id": "owl:Axiom"
       }