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{ | ||
"cells": [ | ||
{ | ||
"cell_type": "code", | ||
"execution_count": 1, | ||
"id": "8e33e371-5d5f-48f3-9450-ca81700a7458", | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"import anywidget\n", | ||
"import traitlets\n", | ||
"\n", | ||
"class ZarrWidget(anywidget.AnyWidget):\n", | ||
" _esm = \"\"\"\n", | ||
" import * as zarr from \"https://esm.sh/zarrita@next\";\n", | ||
" \n", | ||
" function render({ model, el, experimental }) {\n", | ||
" let root = zarr.root({\n", | ||
" async get(key) {\n", | ||
" const [data, buffers] = await experimental.dispatch({\n", | ||
" type: \"get\",\n", | ||
" key,\n", | ||
" });\n", | ||
" if (!data.success) return undefined;\n", | ||
" return buffers[0].buffer;\n", | ||
" },\n", | ||
" });\n", | ||
" \n", | ||
" let pre = document.createElement(\"pre\");\n", | ||
"\n", | ||
" let btn = document.createElement(\"button\");\n", | ||
" btn.innerHTML = `click to load`;\n", | ||
" btn.addEventListener(\"click\", async () => {\n", | ||
" const node = await zarr.open(root.resolve(\"/foo\"), { kind: \"array\" });\n", | ||
" const { data, shape, stride } = await zarr.get(node);\n", | ||
" pre.innerText = JSON.stringify({ data: data.constructor.name, shape, stride });\n", | ||
" });\n", | ||
" el.append(btn, pre);\n", | ||
" }\n", | ||
" export default { render };\n", | ||
" \"\"\"\n", | ||
" def __init__(self, store, **kwargs):\n", | ||
" super().__init__(**kwargs)\n", | ||
" self._store = store\n", | ||
"\n", | ||
" def _anywidget_experimental_reducer(self, action, buffers):\n", | ||
" match action:\n", | ||
" case { \"type\": \"get\", \"key\": key }:\n", | ||
" try:\n", | ||
" buffers = [store[key.lstrip(\"/\")]]\n", | ||
" except KeyError:\n", | ||
" buffers = []\n", | ||
" return { \"success\": len(buffers) == 1 }, buffers\n", | ||
" case _:\n", | ||
" raise ValueError(\"Unknown action\")" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": 2, | ||
"id": "11c02f74-25aa-406e-9fe8-f3dbb0e58d0f", | ||
"metadata": {}, | ||
"outputs": [ | ||
{ | ||
"ename": "ModuleNotFoundError", | ||
"evalue": "No module named 'zarr'", | ||
"output_type": "error", | ||
"traceback": [ | ||
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", | ||
"\u001b[0;31mModuleNotFoundError\u001b[0m Traceback (most recent call last)", | ||
"Cell \u001b[0;32mIn[2], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mzarr\u001b[39;00m\n\u001b[1;32m 2\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mzarr\u001b[39;00m\u001b[38;5;21;01m.\u001b[39;00m\u001b[38;5;21;01mstorage\u001b[39;00m\n\u001b[1;32m 4\u001b[0m store \u001b[38;5;241m=\u001b[39m zarr\u001b[38;5;241m.\u001b[39mstorage\u001b[38;5;241m.\u001b[39mMemoryStore()\n", | ||
"\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'zarr'" | ||
] | ||
} | ||
], | ||
"source": [ | ||
"import zarr\n", | ||
"import zarr.storage\n", | ||
"\n", | ||
"store = zarr.storage.MemoryStore()\n", | ||
"grp = zarr.open(store)\n", | ||
"grp.create_dataset(\"foo\", shape=[10, 10])\n", | ||
"\n", | ||
"ZarrWidget(store=store)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": 3, | ||
"id": "9b5a3ee9-5aad-44dd-a5c2-202bac57bd3f", | ||
"metadata": {}, | ||
"outputs": [ | ||
{ | ||
"name": "stdout", | ||
"output_type": "stream", | ||
"text": [ | ||
"Collecting zarr\n", | ||
" Using cached zarr-2.17.0-py3-none-any.whl.metadata (5.7 kB)\n", | ||
"Collecting asciitree (from zarr)\n", | ||
" Using cached asciitree-0.3.3-py3-none-any.whl\n", | ||
"Collecting numpy>=1.21.1 (from zarr)\n", | ||
" Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl.metadata (61 kB)\n", | ||
"Collecting numcodecs>=0.10.0 (from zarr)\n", | ||
" Using cached numcodecs-0.12.1-cp312-cp312-macosx_11_0_arm64.whl.metadata (2.8 kB)\n", | ||
"Collecting fasteners (from zarr)\n", | ||
" Using cached fasteners-0.19-py3-none-any.whl.metadata (4.9 kB)\n", | ||
"Using cached zarr-2.17.0-py3-none-any.whl (207 kB)\n", | ||
"Using cached numcodecs-0.12.1-cp312-cp312-macosx_11_0_arm64.whl (1.4 MB)\n", | ||
"Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl (13.7 MB)\n", | ||
"Using cached fasteners-0.19-py3-none-any.whl (18 kB)\n", | ||
"Installing collected packages: asciitree, numpy, fasteners, numcodecs, zarr\n", | ||
"Successfully installed asciitree-0.3.3 fasteners-0.19 numcodecs-0.12.1 numpy-1.26.4 zarr-2.17.0\n", | ||
"Note: you may need to restart the kernel to use updated packages.\n" | ||
] | ||
} | ||
], | ||
"source": [ | ||
"%pip install zarr" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"id": "66f1bd83-d08c-4f47-a97b-d8ce3a74e19d", | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [] | ||
} | ||
], | ||
"metadata": { | ||
"kernelspec": { | ||
"display_name": "Python 3 (ipykernel)", | ||
"language": "python", | ||
"name": "python3" | ||
}, | ||
"language_info": { | ||
"codemirror_mode": { | ||
"name": "ipython", | ||
"version": 3 | ||
}, | ||
"file_extension": ".py", | ||
"mimetype": "text/x-python", | ||
"name": "python", | ||
"nbconvert_exporter": "python", | ||
"pygments_lexer": "ipython3", | ||
"version": "3.12.1" | ||
}, | ||
"widgets": { | ||
"application/vnd.jupyter.widget-state+json": { | ||
"state": {}, | ||
"version_major": 2, | ||
"version_minor": 0 | ||
} | ||
} | ||
}, | ||
"nbformat": 4, | ||
"nbformat_minor": 5 | ||
} |
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{ | ||
"cells": [ | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"id": "31fea651-983d-4d48-b8a3-6407f8e9cc75", | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [] | ||
} | ||
], | ||
"metadata": { | ||
"kernelspec": { | ||
"display_name": "Python 3 (ipykernel)", | ||
"language": "python", | ||
"name": "python3" | ||
}, | ||
"language_info": { | ||
"codemirror_mode": { | ||
"name": "ipython", | ||
"version": 3 | ||
}, | ||
"file_extension": ".py", | ||
"mimetype": "text/x-python", | ||
"name": "python", | ||
"nbconvert_exporter": "python", | ||
"pygments_lexer": "ipython3", | ||
"version": "3.12.1" | ||
}, | ||
"widgets": { | ||
"application/vnd.jupyter.widget-state+json": { | ||
"state": {}, | ||
"version_major": 2, | ||
"version_minor": 0 | ||
} | ||
} | ||
}, | ||
"nbformat": 4, | ||
"nbformat_minor": 5 | ||
} |
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import * as zarr from "https://esm.sh/zarrita@next"; | ||
|
||
function render({ model, el, experimental }) { | ||
let root = zarr.root({ | ||
async get(key) { | ||
const [data, buffers] = await experimental.dispatch({ | ||
type: "get", | ||
key, | ||
}); | ||
if (!data.success) return undefined; | ||
return buffers[0].buffer; | ||
}, | ||
}); | ||
|
||
let btn = document.createElement("button"); | ||
btn.innerHTML = `click to load`; | ||
btn.addEventListener("click", async () => { | ||
const node = await zarr.open(root.resolve("/blosc"), { kind: "array" }); | ||
const arr = await zarr.get(node); | ||
console.log(arr); | ||
}); | ||
el.appendChild(btn); | ||
} | ||
export default { render }; |
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