update bioregistry on 2024-07-20 #583
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| name: Tests | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| pytest: | |
| name: pytest | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 4 | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-latest | |
| - windows-latest | |
| - macOS-latest | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| pandoc-version: | |
| - "2.9.2" | |
| - "2.11.3.1" | |
| exclude: | |
| # exclude due to https://github.com/r-lib/actions/issues/206 | |
| - os: windows-latest | |
| pandoc-version: "2.11.3.1" | |
| # reduce non-essential builds | |
| - python-version: "3.8" | |
| pandoc-version: "2.9.2" | |
| include: | |
| - pandoc-version: "2.9.2" | |
| panflute-version: "1.12.5" | |
| - pandoc-version: "2.11.3.1" | |
| panflute-version: "2.0.5" | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| with: | |
| # pandoc-versions from 2.7.3 to 2.9.1 won't install on Windows | |
| # https://github.com/jgm/pandoc/issues/6071 | |
| pandoc-version: ${{ matrix.pandoc-version }} | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ".[webpage,dev]" panflute==${{ matrix.panflute-version }} | |
| - name: Test with pytest | |
| env: | |
| LANG: en_US.UTF-8 # https://github.com/jgm/citeproc/issues/26 | |
| GITHUB_PULL_REQUEST_SHA: ${{ github.event.pull_request.head.sha }} | |
| run: pytest | |
| pre-commit: | |
| name: Pre-Commit Checks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' # should match default_language_version in .pre-commit-config.yaml | |
| - name: Run checks | |
| uses: pre-commit/[email protected] | |
| docs: | |
| name: Build Docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install ".[webpage,dev]" | |
| - name: Build docs | |
| run: | | |
| # temporary workaround for portray "Module not found" error https://git.io/JeR9C | |
| export PYTHONPATH=. | |
| portray as_html --overwrite --output_dir=docs | |
| - name: Deploy docs | |
| if: github.ref == 'refs/heads/main' && github.event_name == 'push' && !github.event.repository.fork | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs | |
| publish_branch: gh-pages |