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Add download-micromamba

Add download-micromamba #559

Workflow file for this run

.github/workflows/test.yml at 397551c
name: CI
on:
push:
branches: [main]
pull_request:
branches: [main]
merge_group:
jobs:
# no-environment-file:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-name: test
# create-args: >-
# python
# cython
# - run: |
# micromamba info | grep -q "environment : test"
# shell: bash -el {0}
# environment-file:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-file: 'test/environment.yml'
# - run: |
# micromamba info | grep -q "environment : env-name"
# shell: bash -el {0}
# no-environment:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# - run: |
# micromamba info | grep -q "environment : None (not found)"
# shell: bash -el {0}
# micromamba-old-version-1:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# micromamba-version: 1.4.5-0
# environment-file: 'test/environment.yml'
# - run: test "$(micromamba --version)" = 1.4.5
# shell: bash -el {0}
# micromamba-old-version-2:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# micromamba-version: 1.2.0-1 # this will throw a warning
# environment-file: 'test/environment.yml'
# - run: test "$(micromamba --version)" = 1.2.0
# shell: bash -el {0}
# micromamba-shell:
# strategy:
# matrix:
# os: [ubuntu-latest, macos-latest]
# runs-on: ${{ matrix.os }}
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# init-shell: ''
# environment-file: ''
# create-args: pytest
# environment-name: test
# - run: |
# pytest --version
# python --version
# shell: micromamba-shell {0}
# bash:
# strategy:
# matrix:
# os: [ubuntu-latest, macos-latest, windows-latest]
# runs-on: ${{ matrix.os }}
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# init-shell: bash
# environment-file: 'test/environment.yml'
# - run: |
# micromamba info | grep -q "environment : env-name"
# shell: bash -el {0}
# multiple-shell-init:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# init-shell: >-
# bash
# powershell
# environment-file: 'test/environment.yml'
# - run: |
# micromamba info | grep -q "environment : env-name"
# shell: bash -el {0}
# - name: micromamba info (pwsh)
# run: micromamba info
# shell: pwsh
# # TODO: powershell equivalent of `micromamba info | grep -q "environment : env-name"`
# cmd:
# runs-on: windows-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# init-shell: cmd.exe
# environment-file: 'test/environment.yml'
# - name: micromamba info (cmd.exe)
# run: micromamba info
# shell: cmd /C CALL {0}
# # TODO: cmd equivalent of `micromamba info | grep -q "environment : env-name"`
# powershell:
# strategy:
# matrix:
# os: [ubuntu-latest, macos-latest, windows-latest]
# runs-on: ${{ matrix.os }}
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# init-shell: powershell
# environment-file: 'test/environment.yml'
# - name: micromamba info (pwsh)
# run: micromamba info
# shell: pwsh
# - name: micromamba info (powershell)
# if: matrix.os == 'windows-latest'
# run: micromamba info
# shell: powershell
# # TODO: powershell equivalent of `micromamba info | grep -q "environment : env-name"`
# env-variable:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-file: 'test/environment.yml'
# - run: | # this should work even without `bash -l {0}`
# [ -n "$MAMBA_ROOT_PREFIX" ]
# [ -n "$MAMBA_EXE" ]
# [ -n "$CONDARC" ]
# custom-condarc:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-file: 'test/environment.yml'
# condarc-file: 'test/.condarc'
# - run: | # this should only work when the pytorch channel is loaded, i.e., the custom condarc is used
# micromamba search pytorch=2.0.0
# micromamba search pytorch=2.0.0 | grep -q "pytorch 2.0.0 py3.10_cpu_0"
# shell: bash -el {0}
# conda-lock:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-file: 'test/conda-lock.yml'
# environment-name: locked-env
# - run: |
# micromamba list | grep -q "python 3.11.3 h2755cc3_0_cpython conda-forge"
# shell: bash -el {0}
# comment-in-environment-file:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-file: 'test/environment2.yml'
# - run: |
# micromamba info | grep -q "environment : env-name2"
# shell: bash -el {0}
# - run: |
# python --version | grep -q "Python 3.10.1"
# # micromamba-shell uses the environment-name inferred by setup-micromamba
# shell: micromamba-shell {0}
# create-args-multiple-spaces-1:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-name: test
# create-args: python pytest
# - run: |
# micromamba list | grep -q python
# micromamba list | grep -q pytest
# shell: bash -el {0}
# create-args-multiple-spaces-2:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# environment-file: test/environment2.yml
# create-args: -c bioconda pytest
# - run: |
# micromamba list | grep -q python
# micromamba list | grep -q pytest
# shell: bash -el {0}
# output-environment-path-env-file:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# id: setup-micromamba
# with:
# environment-file: 'test/environment.yml'
# - run: |
# test ${{ steps.setup-micromamba.outputs.environment-path }} = "$HOME/micromamba/envs/env-name"
# ls ${{ steps.setup-micromamba.outputs.environment-path }}
# output-environment-path-env-name-overwrite:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# id: setup-micromamba
# with:
# environment-file: 'test/environment.yml'
# environment-name: test
# - run: |
# test "${{ steps.setup-micromamba.outputs.environment-path }}" = /home/runner/micromamba/envs/test
# ls "${{ steps.setup-micromamba.outputs.environment-path }}"
# output-environment-path-custom-root-prefix:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# id: setup-micromamba
# with:
# environment-name: test
# micromamba-root-path: /home/runner/custom-micromamba-root-prefix
# - run: |
# test "${{ steps.setup-micromamba.outputs.environment-path }}" = /home/runner/custom-micromamba-root-prefix/envs/test
# ls "${{ steps.setup-micromamba.outputs.environment-path }}"
# output-no-environment-path:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# id: setup-micromamba
# - run: |
# test "${{ steps.setup-micromamba.outputs.environment-path }}" = ""
# check-micromamba-on-path:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# init-shell: none
# environment-file: test/environment.yml
# - run: |
# which micromamba | grep /home/runner/micromamba-bin/micromamba
# type micromamba | grep "micromamba is /home/runner/micromamba-bin/micromamba"
# which micromamba-shell | grep /home/runner/micromamba-bin/micromamba-shell
# shell: bash -el {0}
use-micromamba-from-path:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Add micromamba to path
run: |
curl -Ls https://github.com/mamba-org/micromamba-releases/releases/latest/download/micromamba-linux-64 -o /usr/local/bin/micromamba
chmod +x /usr/local/bin/micromamba
which micromamba
- uses: ./
with:
environment-file: test/environment.yml
download-micromamba: false
micromamba-binary-path: micromamba # this is the micromamba from PATH
- run: |
set -x
micromamba info | grep -q "environment : env-name"
shell: bash -elo pipefail {0}
use-from-path-with-custom-path:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Add micromamba to path
run: |
mkdir -p "$HOME/not-on-path/bin"
curl -Ls https://github.com/mamba-org/micromamba-releases/releases/latest/download/micromamba-linux-64 -o "$HOME/not-on-path/bin/micromamba"
chmod +x "$HOME/not-on-path/bin/micromamba"
- uses: ./
with:
environment-file: test/environment.yml
download-micromamba: false
micromamba-binary-path: ~/not-on-path/bin/micromamba
- run: |
set -x
micromamba info | grep -q "environment : env-name"
which micromamba | grep not-on-path/bin
shell: bash -elo pipefail {0}
# not properly testable
# https://github.com/actions/runner/issues/2347
# https://github.com/orgs/community/discussions/15452
# create-args-no-env-name:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# create-args: >-
# python
# pytest
# - run: exit 1
# if: success()
# incorrect-version:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# micromamba-version: '1.2.3'
# - run: exit 1
# if: success()
# incorrect-log-level:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - uses: ./
# with:
# log-level: foo
# - run: exit 1
# if: success()