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Upgrade msprime to 0.6.2 #33

Merged
merged 3 commits into from
Feb 4, 2019
Merged

Upgrade msprime to 0.6.2 #33

merged 3 commits into from
Feb 4, 2019

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alimanfoo
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Hopefully fixes #30.

xref conda-forge/msprime-feedstock#20

There is currently some conflict between msprime and openblas.

I think this will work, but will drop openblas to 0.3.3
@hardingnj
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Trying with build enforced.

@jeromekelleher
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Hopefully the most recent build will work. I think what's happening is the that solver really wants to minimise the number of 'features' in the environment, so it's preferring older builds with fewer features. These are broken for msprime, so I've asked the admins to move them to the 'broken' label on conda forge: conda-forge/msprime-feedstock#24

Hopefully that's mean that we don't need to force a specific build and these undead zombie builds will finally go away.

@jeromekelleher
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Looks like this failed on OSX because the hash values for the package files are different. Best to wait until the broken packages are taken out of circulation and try again with 0.6.2 and no further requirements.

@hardingnj
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Thanks. I'll keep an eye on that issue.

@jeromekelleher
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Can you try again please @hardingnj, with just msprime=0.6.2? The broken packages are out of circulation now, so fingers crossed.

@alimanfoo
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Thanks @hardingnj for picking this up 👍

@hardingnj
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Installs msprime 0.6.2 ok, but unsure why pdflatex is failing

@jeromekelleher
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Hooray on msprime working! Hopefully it doesn't have anything to do with your pdflatex problems...

@alimanfoo
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Latex install failed but may be just a transient problem, I've restarted that build. Definitely unrelated to msprime, thanks @hardingnj and @jeromekelleher for sorting that 👍

@alimanfoo
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CI happy now.

@alimanfoo alimanfoo merged commit f4a48d3 into master Feb 4, 2019
@alimanfoo alimanfoo deleted the alimanfoo-patch-3 branch February 4, 2019 19:47
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Fix msprime import error
3 participants