1.1.1

Changelog

• Shannon now user Quorum corrected reads. This should greatly reduce Shannon runtime and RAM use.
• The version number was added to the various outputs, to help users understand which version of the software was used.
• Various bugs were fixed

PeerJ revision

This is the code, as it exists upon resubmission to PeerJ.

1.0.1

This new release make a few small changes that enhance usability but not functionality.

• the BUSCO reports and Salmon quants are all now placed in reports/ and quants/ respectively.
• the --no-version-check flag has been added to Salmon, because most people are running on non-internet connected compute nodes.

1.0.0

This is the working version on submission to PeerJ

Version 0.0.1

This is the 1st release, and should be considered as beta. Once installed, it should work, but getting things installed, particularly as your OS diverges from Ubuntu/CentOS, might be tricky