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add MCL
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macmanes committed Aug 22, 2017
1 parent 04ec548 commit 3bd0e9c
Showing 1 changed file with 9 additions and 1 deletion.
10 changes: 9 additions & 1 deletion Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -17,9 +17,10 @@ trimmomaticpath := $(shell which trimmomatic 2>/dev/null)
salmonpath := $(shell which salmon 2>/dev/null)
bowtie2path := $(shell which bowtie2 2>/dev/null)
hmmerpath := $(shell which hmmsan 2>/dev/null)
mclpath := $(shell which mcl 2>/dev/null)


all: setup brew hmmer orthofuser rcorrector blast spades trinity shannon seqtk busco trimmomatic transrate bowtie2 salmon postscript
all: setup brew mcl hmmer orthofuser rcorrector blast spades trinity shannon seqtk busco trimmomatic transrate bowtie2 salmon postscript

.DELETE_ON_ERROR:

Expand Down Expand Up @@ -48,6 +49,13 @@ else
brew install rcorrector
endif

mcl:
ifdef mclpath
@echo "MCL is already installed"
else
brew install mcl
endif

hmmer:
ifdef hmmerpath
@echo "HMMER is already installed"
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