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ORP version 2.1.1
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@macmanes macmanes released this 15 Feb 16:28
· 213 commits to master since this release
2.1.1
5ef5f66

Change log for Version 2.1.1

  • Updated conda environment name to orp rather than orp_v2
  • Users may now specify kmer length to be used for Trinity using flag TRINITY_KMER=INT and for SPAdes using flags SPADES1_KMER=INT for the 1st SPAdes run and SPADES2_KMER=INT for the 2nd SPAdes run. Note the max kmer for trinity is 32, and for SPAdes it is 96. For all assemblies, the kmer length must be read_length-1 at a maximum.
  • Add a check to make sure reads are of sufficient length given your selected assembly kmer length
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