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fix printout
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Matthew MacManes committed Jul 26, 2018
1 parent 1299af8 commit ee8958c
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions oyster.mk
Original file line number Diff line number Diff line change
Expand Up @@ -263,15 +263,15 @@ reportgen:
cat $$(find reports/transrate_${RUNOUT} -name assemblies.csv) | awk -F , '{print $$37}' | sed -n 2p | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** TRANSRATE OPTIMAL SCORE ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
cat $$(find reports/transrate_${RUNOUT} -name assemblies.csv) | awk -F , '{print $$38}' | sed -n 2p | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES ORP ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES ORP ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
cat ${DIR}/assemblies/${RUNOUT}.unique.ORP.txt | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES TRINITY ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES TRINITY ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
cat ${DIR}/assemblies/diamond/${RUNOUT}.unique.trinity.txt | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES SPADES55 ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES SPADES55 ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
cat ${DIR}/assemblies/diamond/${RUNOUT}.unique.sp55.txt | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES SPADES75 ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES SPADES75 ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
cat ${DIR}/assemblies/diamond/${RUNOUT}.unique.sp75.txt | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES TRANSABYSS ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
printf "***** UNIQUE GENES TRANSABYSS ~~~~~> " | tee -a ${DIR}/reports/qualreport.${RUNOUT}
cat ${DIR}/assemblies/diamond/${RUNOUT}.unique.transabyss.txt | tee -a ${DIR}/reports/qualreport.${RUNOUT}

printf " \n\n"
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