Update CI jobs and documentation build to Julia-1.11

.github/workflows/debug_checks.yml

@@ -17,7 +17,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
           arch: x64
       - uses: julia-actions/cache@v2
       - name: Debug test

.github/workflows/documentation.yml

@@ -14,7 +14,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
       - uses: julia-actions/cache@v2
       - name: Install dependencies
         run: |
@@ -33,7 +33,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
       - name: Install dependencies
         run: |
           # Version 3.9.0 of matplotlib causes an error with PyPlot.jl, so pin

.github/workflows/examples.yml

@@ -16,7 +16,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
       - uses: julia-actions/cache@v2
       - name: Test examples
         run: |

.github/workflows/longtest.yml

@@ -21,7 +21,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
       - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@v1
         with:

.github/workflows/parallel_test.yml

@@ -16,7 +16,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
           arch: x64
       - uses: julia-actions/cache@v2
       - run: |
@@ -43,7 +43,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
       - uses: julia-actions/cache@v2
       - run: |
           touch Project.toml

.github/workflows/test.yml

@@ -20,7 +20,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
       - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@v1
         with:

.github/workflows/test_scripts.yml

@@ -16,7 +16,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.10'
+          version: '1.11'
       - uses: julia-actions/cache@v2
       - name: Test test_scripts
         run: |

docs/Project.toml

@@ -1,10 +1,15 @@
 [deps]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 Glob = "c27321d9-0574-5035-807b-f59d2c89b15c"
-Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 makie_post_processing = "4dd1b173-c370-4c56-9cc2-d797e41ae9f0"
 moment_kinetics = "b5ff72cc-06fc-4161-ad14-dba1c22ed34e"
 plots_post_processing = "c3e9b6e6-652c-46aa-9ac0-1bc582aad122"
 
-[compat]
-Documenter = "0.27"
+[sources.makie_post_processing]
+path = "../makie_post_processing/makie_post_processing"
+
+[sources.moment_kinetics]
+path = "../moment_kinetics/"
+
+[sources.plots_post_processing]
+path = "../plots_post_processing/plots_post_processing"

docs/make.jl

@@ -1,27 +1,24 @@
 using Pkg
 
-repo_dir = dirname(dirname(@__FILE__))
-Pkg.develop([PackageSpec(path=joinpath(repo_dir, "moment_kinetics")),
-             PackageSpec(path=joinpath(repo_dir, "makie_post_processing", "makie_post_processing")),
-             PackageSpec(path=joinpath(repo_dir, "plots_post_processing", "plots_post_processing"))])
 Pkg.instantiate()
 
-using Documenter
+using Documenter, UUIDs
 using moment_kinetics, makie_post_processing, plots_post_processing
 
-if get(ENV, "CI", nothing) == "true"
-    # On the CI, run in strict mode to turn warnings into errors, so that we don't deploy
-    # documentation with formatting bugs.
-    strict = true
-else
-    strict = false
-end
-
 makedocs(
     sitename = "moment_kinetics",
-    format = Documenter.HTML(prettyurls = get(ENV, "CI", nothing) == "true"),
+    format = Documenter.HTML(prettyurls = get(ENV, "CI", nothing) == "true",
+                             size_threshold = 1000000,
+                             size_threshold_warn = 500000,
+                             # Use the following horrible incantation to get the version
+                             # of moment_kinetics. moment_kinetics is the package with the
+                             # UUID being used here. We need to do this because the
+                             # Project.toml in the top-level directory is user-generated
+                             # and does not have a version, but this is the Project.toml
+                             # that would be used by default by Documenter.jl.
+                             inventory_version = Pkg.dependencies()[UUID("b5ff72cc-06fc-4161-ad14-dba1c22ed34e")].version,
+                            ),
     modules = [moment_kinetics, makie_post_processing, plots_post_processing],
-    strict = strict,
 )
 
 if get(ENV, "CI", nothing) == "true"

moment_kinetics/test/calculus_tests.jl

@@ -701,7 +701,7 @@ function runtests()
                     # something like p*(round-off) for x^p (?) so error on expected_df would
                     # be p*p*(round-off), or plausibly 1024*(round-off), so tolerance of
                     # 2e-11 isn't unreasonable.
-                    @test isapprox(df, expected_df, rtol=2.0e-11, atol=6.0e-12,
+                    @test isapprox(df, expected_df, rtol=3.0e-11, atol=6.0e-12,
                                    norm=maxabs_norm)
                 end
             end