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m-abdullah-nabeel/README.md

Hi there 👋

  • 🔭 I have a degree in Doctor of Veterinary Medicine (DVM).
  • 😄 Fun fact: I am a self-taught programmer.
  • 🤔 I am transitioning to computational biology and data science.
  • ⚡ I have learned genomic data analysis, bulk RNA-seq, and single-cell RNA-seq data analysis.
  • 🌱 I have developed and sold desktop software, web apps, and Android apps.
  • ✨ I have worked with React-Native for cross-platform mobile apps.
  • 👯 I am well-versed in ReactJS, NextJS, Django, Flask, SQL & NoSQL, FastAPI, and ExpressJS.
  • ⚡ I want to grow my skills through projects in bioinformatics, computational biology, and data science.
  • 💬 Ask me about genomics, machine learning, Python, NodeJS, and R.
  • 🎁 Gists - https://gist.github.com/m-abdullah-nabeel
  • 📫 Portfolio - https://dr-abdullah-nabeel.web.app
  • 💥 Blog - https://medium.com/@manabeel.vet
  • 🛴 Services - https://www.fiverr.com/manabeel

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  1. genome_mapping_using_bowtie2 genome_mapping_using_bowtie2
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    sudo apt install bowtie2
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    mkdir ce_idx
    
              
    
              
    
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    bowtie2-build --threads 4 ref/GCF_000002985.6_WBcel235_genomic.fna ce_idx/idx
    
              
    
              
    
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          Bioconductor-for-Genomic-Data-Science  Bioconductor-for-Genomic-Data-Science          Public
        
    
      
    


      
    
        My efforts on completing this course, documented online to help you not quit learning.
      
    

      
    
      
    
    
    
  
    

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        Bcftools - Variant Calling and Stati...  Bcftools - Variant Calling and Statistics      
    

          
    
              
    
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    # creating a vcf file 
    
              
    
              
    
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    bcftools mpileup -f ref/GCF_000002985.6_WBcel235_genomic.fna -o vars/raw.vcf -O v --threads 8 maps/bt2.g.sorted.bam
    
              
    
              
    
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    # getting only variants
    
              
    
              
    
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    bcftools call --ploidy 2 -v -m -o vars/var.vcf vars/raw.vcf
    
              
    
          
    
    
    
  
    

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          bioinformatics-1  bioinformatics-1          Public
        
    
      
    


      
    
        
      
    

      
    
          
  
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          employees-evaluation-by-points-scoring-firebase-react-MUI  employees-evaluation-by-points-scoring-firebase-react-MUI          Public
        
    
      
    


      
    
        
      
    

      
    
          
  
  JavaScript


      
    
    
    
  
    

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          handwritten-digit-recognizer-sklearn  handwritten-digit-recognizer-sklearn          Public
        
    
      
    


      
    
        
      
    

      
    
          
  
  Jupyter Notebook


      
    
    
    
  
    

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