Release Pylake v0.10.1 #207
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new version of `docutils` seems to cause our docs build to fail
JoepVanlier
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tiagobonetti,
agom,
rpauszek and
facutuesca
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facutuesca
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Oct 27, 2021
changelog.md
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| * Added `KymoLineGroup.fit_binding_times()` to allow for dwelltime analysis of bound states found using kymotracker. See [kymotracking](https://lumicks-pylake.readthedocs.io/en/latest/tutorial/kymotracking.html) for more information. | |||
| * Allow using data acquired with a fast force sensor by passing `fast_sensor=True` when creating a `PassiveCalibrationModel`. | |||
| * Allow using hydrodynamically correct power spectrum when performing force calibration. See [force calibration](https://lumicks-pylake.readthedocs.io/en/latest/tutorial/force_calibration.html) for more information. | |||
| * Add ability to crop `CorrelatedStacks`. See [Correlated stacks](https://lumicks-pylake.readthedocs.io/en/latest/tutorial/correlatedstacks.html#correlated-stacks) for more information. | |||
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Suggested change
| * Add ability to crop `CorrelatedStacks`. See [Correlated stacks](https://lumicks-pylake.readthedocs.io/en/latest/tutorial/correlatedstacks.html#correlated-stacks) for more information. | |
| * Added ability to crop `CorrelatedStacks`. See [Correlated stacks](https://lumicks-pylake.readthedocs.io/en/latest/tutorial/correlatedstacks.html#correlated-stacks) for more information. |
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(also for the axial force detection, the first line)
changelog.md
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| #### Bug fixes | ||
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| * Show an error message when user attempts to refine lines before tracking or loading them so the kymotracker widget does not become unresponsive. | ||
| * Force calibration models now throw an error when a bead diameter of less than `10^-2` microns is used (rather than produce `NaN` results). | ||
| * Fixed bug that prevented export of `CorrelatedStack` if the alignment matrices were missing from the metadata. | ||
| * Fixed bug where the exported metadata fields were erroneously exported as `"Applied channel X alignment"` for `CorrelatedStack` where the alignment was not actually applied. | ||
| * Fix error in optimal point determination for MSD estimator. Note that this bug led to an error being thrown when the number of points in the trace was exactly 4. Now it results in a more informative error message (`You need at least 5 time points to estimate the number of points to include in the fit.`). |
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Suggested change
| * Fix error in optimal point determination for MSD estimator. Note that this bug led to an error being thrown when the number of points in the trace was exactly 4. Now it results in a more informative error message (`You need at least 5 time points to estimate the number of points to include in the fit.`). | |
| * Fixed error in optimal point determination for MSD estimator. Note that this bug led to an error being thrown when the number of points in the trace was exactly 4. Now it results in a more informative error message (`You need at least 5 time points to estimate the number of points to include in the fit.`). |
JoepVanlier
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Why this PR?
The time has come to do another Pylake release.
Reason for the release now is to make sure there's a release to tag for specific force calibration improvements.
Some notes:
I have piggybacked a few very small docs fixups and pinning the
docutilsto<0.18since we were having issues with the docs failing on RtD. See also readthedocs/readthedocs.org#8616Note that I have not entered a date in the changelog yet, but I will do so once the PR is approved.
Docs build here: https://lumicks-pylake.readthedocs.io/en/release_pr