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Quarto GHA Workflow Runner committed Nov 13, 2024
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2 changes: 1 addition & 1 deletion .nojekyll
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11 changes: 6 additions & 5 deletions mod_data-viz.html
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Expand Up @@ -1186,10 +1186,11 @@ <h3 class="anchored" data-anchor-id="additional-needed-packages">Additional Need
<p>It can be helpful to visualize all numeric variables in your dataset, grouped by site (or dataset source) to check that the data have been homogenized correctly. As an example, we’ll use a 2019 dataset on lake water quality, chemistry, and zooplankton community composition near the <a href="https://nwt.lternet.edu/">Niwot Ridge</a> LTER. The dataset is a survey of 16 high alpine lakes and has structure similar to one that might be included in a multi-site synthesis. For more information on these data, check out <a href="https://portal.edirepository.org/nis/mapbrowse?packageid=knb-lter-nwt.12.1">the data package on EDI</a>.</p>
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<div class="sourceCode cell-code" id="annotated-cell-19"><pre class="sourceCode r code-annotation-code code-with-copy code-annotated"><code class="sourceCode r"><span id="annotated-cell-19-1"><a href="#annotated-cell-19-1" aria-hidden="true" tabindex="-1"></a><span class="co"># Read in data</span></span>
<button class="code-annotation-anchor" data-target-cell="annotated-cell-19" data-target-annotation="1">1</button><span id="annotated-cell-19-2" class="code-annotation-target"><a href="#annotated-cell-19-2" aria-hidden="true" tabindex="-1"></a>green_biochem <span class="ot">&lt;-</span> <span class="fu">read.csv</span>(<span class="at">file =</span> <span class="fu">file.path</span>(<span class="st">"data"</span>, <span class="st">"green-lakes_water-chem-zooplank.csv"</span>))</span>
<span id="annotated-cell-19-3"><a href="#annotated-cell-19-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="annotated-cell-19-4"><a href="#annotated-cell-19-4" aria-hidden="true" tabindex="-1"></a><span class="co"># Check structure</span></span>
<span id="annotated-cell-19-5"><a href="#annotated-cell-19-5" aria-hidden="true" tabindex="-1"></a><span class="fu">str</span>(green_biochem)</span><div class="code-annotation-gutter-bg"></div><div class="code-annotation-gutter"></div></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<button class="code-annotation-anchor" data-target-cell="annotated-cell-19" data-target-annotation="1">1</button><span id="annotated-cell-19-2" class="code-annotation-target"><a href="#annotated-cell-19-2" aria-hidden="true" tabindex="-1"></a>green_biochem <span class="ot">&lt;-</span> <span class="fu">read.csv</span>(<span class="at">file =</span> <span class="fu">file.path</span>(<span class="st">"data"</span>, <span class="st">"green-lakes_water-chem-zooplank.csv"</span>)) <span class="sc">%&gt;%</span></span>
<span id="annotated-cell-19-3"><a href="#annotated-cell-19-3" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">mutate</span>(<span class="at">date =</span> <span class="fu">as.Date</span>(date))</span>
<span id="annotated-cell-19-4"><a href="#annotated-cell-19-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="annotated-cell-19-5"><a href="#annotated-cell-19-5" aria-hidden="true" tabindex="-1"></a><span class="co"># Check structure</span></span>
<span id="annotated-cell-19-6"><a href="#annotated-cell-19-6" aria-hidden="true" tabindex="-1"></a><span class="fu">str</span>(green_biochem)</span><div class="code-annotation-gutter-bg"></div><div class="code-annotation-gutter"></div></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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<dl class="code-annotation-container-hidden code-annotation-container-grid">
<dt data-target-cell="annotated-cell-19" data-target-annotation="1">1</dt>
Expand All @@ -1203,7 +1204,7 @@ <h3 class="anchored" data-anchor-id="additional-needed-packages">Additional Need
$ local_site : chr "Blue Lake" "Blue Lake" "Blue Lake" "Blue Lake" ...
$ location : chr "LAKE" "LAKE" "LAKE" "LAKE" ...
$ depth : num 0 1 2 3 4 5 6 7 8 9 ...
$ date : chr "2016-07-08" "2016-07-08" "2016-07-08" "2016-07-08" ...
$ date : Date, format: "2016-07-08" "2016-07-08" ...
$ time : chr "09:11:00" "09:13:00" "09:14:00" "09:16:00" ...
$ chl_a : num 0.521 NA NA NA NA NA NA NA NA NA ...
$ pH : num 6.75 6.78 6.72 6.67 6.57 6.55 6.52 6.51 6.48 6.49 ...
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2 changes: 1 addition & 1 deletion search.json
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56 changes: 28 additions & 28 deletions sitemap.xml
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