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lszeremeta authored Oct 18, 2020
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Expand Up @@ -95,7 +95,7 @@ Running SDFEater without parameters displays help.
* `-p,--periodic` - add additional atoms data from [periodic table](https://github.com/lszeremeta/SDFEater/blob/master/src/main/resources/pl/edu/uwb/ii/sdfeater/periodic_table.json) (for `cypher` output format)
* `-u,--urls` - try to generate full database URLs instead of IDs (enabled in `cvme`)

Remember about the appropriate file path when using Docker image. Suppose you mounted your local directory `/home/user/input` under `/app/input` and the path to the SDF file you want to use in SDFEater is `/home/user/input/file.sdf`, enter the path `/app/input/file.sdf` or `input/file.sdf` as the value of the `-i` argument.
Remember about the appropriate file path when using Docker image. Suppose you mounted your local directory `/home/user/input` under `/app/input` and the path to the SDF file you want to use in SDFEater is `/home/user/input/file.sdf`. In this case, enter the path `/app/input/file.sdf` or `input/file.sdf` as the value of the `-i` argument.

## Output formats

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