Code

Docker multistage#48

Code

Merged

lskatz merged 172 commits intomasterlskatz/SneakerNet:masterfrom docker-multistagelskatz/SneakerNet:docker-multistageCopy head branch name to clipboardOct 13, 2020

+344-118

Commits

Commits on Sep 18, 2020

• testing docker from github

  lskatz

  committed
  d952f27

• minor fix to travis-ci

  lskatz

  committed
  c74ab18

• changed branch to $TRAVIS_BRANCH

  lskatz

  committed
  9685a05

• adding env variables

  lskatz

  committed
  2433f3c

Commits on Sep 19, 2020

• adding env variables

  lskatz

  committed
  2bb8371

• double checking that travis variables are set up

  lskatz

  committed
  df14da6

• double checking that travis variables are set up

  lskatz

  committed
  85637f3

• double checking that travis variables are set up

  lskatz

  committed
  97a2f8b

• changing from deploy tag to after_success tag

  lskatz

  committed
  1c821c1

• lowercase slug

  lskatz

  committed
  558fab0

• trying to fix the build tag name

  lskatz

  committed
  88c6771

• trying to fix the build tag name

  lskatz

  committed
  a1f7e50

• chewbbaca with python3

  lskatz

  committed
  69ffee9

• chewbbaca with python3

  lskatz

  committed
  8325f74

• debugging docker tag

  lskatz

  committed
  bd890ba

• debugging docker tag

  lskatz

  committed
  ff1f22f

• debugging docker tag

  lskatz

  committed
  6081831

• debugging docker tag

  lskatz

  committed
  88896f4

• debugging docker tag

  lskatz

  committed
  5bf8efa

• debugging docker tag

  lskatz

  committed
  98c54ee

• fixing docker tag

  lskatz

  committed
  ea62e9b

• fixing docker login

  lskatz

  committed
  a53678b

• explicitly giving lskatz for username

  lskatz

  authored
  b4396c6

• secret variable space

  lskatz

  authored
  39d33e0

• trying to get secret env variables for docker login

  lskatz

  authored
  534e731

• trying out docker caching

  lskatz

  authored
  3722020

• Update .travis.yml

  lskatz

  authored
  743cb77

• fix "docker save"

  lskatz

  authored
  69e40ce

• trying the other kind of caching

  lskatz

  authored
  d797434

• fixed single quote

  lskatz

  authored
  3d5ac5e

• view dockerImages.stdout

  lskatz

  authored
  2eb800e

• added cache folder

  lskatz

  authored
  cdb4499

• test for size of dockerImages.stdout

  lskatz

  authored
  480463f

• from xargs to bash loop

  lskatz

  authored
  cd447ec

• fixed a quote

  lskatz

  authored
  654b900

• a quick rm cache

  lskatz

  authored
  3d3a0ca

• Update .travis.yml

  lskatz

  authored
  64d7995

• after removing all cache

  lskatz

  authored
  37f146c

• rm cache

  lskatz

  authored
  ad6cf9a

• checking if file exists

  lskatz

  authored
  22e1c20

• rm cache

  lskatz

  authored
  0d15ace

• back to normal

  lskatz

  authored
  9f1680d

• Create travis-docker.yml

  lskatz

  authored
  99ddee5

Commits on Sep 21, 2020

• Update travis-docker.yml

  lskatz

  authored
  39555d6

• Update travis-docker.yml

  lskatz

  authored
  20964a8

• docker login

  lskatz

  authored
  3e93a8d

• passwordless login

  lskatz

  committed
  d2a56ca

• docker build

  lskatz

  committed
  6e4d035

• updating run commands for variable printing

  lskatz

  committed
  a6e95f5

• updating run commands for variable printing

  lskatz

  committed
  a41a613

• updating run commands for variable printing

  lskatz

  committed
  a6fc922

• more debugging; switching build directory to HOME

  lskatz

  committed
  bee3267

• more debugging

  lskatz

  committed
  f30fd48

• more debugging

  lskatz

  committed
  5fad0c4

• more debugging

  lskatz

  committed
  e3460b6

• actions/checkout@v2

  lskatz

  committed
  01721e1

• actions/checkout on this branch

  lskatz

  committed
  ae5ea14

• actions/checkout on this branch

  lskatz

  committed
  51a92ca

• actions/checkout on this branch

  lskatz

  committed
  bbbd499

• actions/checkout on this branch

  lskatz

  committed
  3edf96b

• fixed space typo

  lskatz

  committed
  c34331e

• fixed working directory during docker build

  lskatz

  committed
  7383553

• fixed working directory during docker build

  lskatz

  committed
  c3263a2

• fixing docker build

  lskatz

  committed
  c463da9

• fixing docker build

  lskatz

  committed
  1e39336

• fixing docker build

  lskatz

  committed
  ae672be

• fixing docker build

  lskatz

  committed
  74f7bea

• fixing docker build

  lskatz

  committed
  f133b6b

• trying docker push

  lskatz

  committed
  3ab1e10

• using a more appropriate env variable

  lskatz

  committed
  4ee3edb

Commits on Sep 22, 2020

• fixed case on docker tag

  lskatz

  committed
  eff6b7e

• moving env out of job and to global

  lskatz

  committed
  ef8f184

• separating out to multiple jobs that depend on each other, in preparation for any concurrency

  lskatz

  committed
  5d50646

• some concurrency

  lskatz

  committed
  41fa449

• m

  lskatz

  committed
  2d8b5b5

• m

  lskatz

  committed
  bed6349

• added some debugging

  lskatz

  committed
  3fb01ee

• m

  lskatz

  committed
  5da0782

• added init and debugging jobs

  lskatz

  committed
  6bf8409

• init needs debugging

  lskatz

  committed
  79d2cd5

• exporting REMOTE_TAG

  lskatz

  committed
  6f06abb

• figuring out variable continuity

  lskatz

  committed
  81d3d3b

• figuring out variable continuity

  lskatz

  committed
  96ceae5

• passing outputs between jobs

  lskatz

  committed
  224c4fd

• passing outputs between jobs

  lskatz

  committed
  aa693a4

• passing outputs between jobs

  lskatz

  committed
  d44c1f0

• debugging more

  lskatz

  committed
  e5a5cc7

• debugging more

  lskatz

  committed
  b8d85c0

• debugging more with JSON

  lskatz

  committed
  ef8ff63

• debugging more with JSON

  lskatz

  committed
  32ba999

• debugging more with JSON2

  lskatz

  committed
  5890345

• moved git checkout to init job

  lskatz

  committed
  ba2a13d

• maybe I needed to do fromJSON. And moved git checkout back.

  lskatz

  committed
  71b17b1

• JSON3

  lskatz

  committed
  252d7bf

• JSON3

  lskatz

  committed
  0fbc589

• JSON4

  lskatz

  committed
  dd5ac49

• JSON5

  lskatz

  committed
  50579af

• JSON6

  lskatz

  committed
  f65084e

• test slug

  lskatz

  committed
  0bf0065

• removed all underscores and dashes in this output chain

  lskatz

  committed
  c27c9ed

• export slug

  lskatz

  committed
  b148553

• export slug2

  lskatz

  committed
  686d56d

• just trying to make env work at all

  lskatz

  committed
  49cfe5c

• env2

  lskatz

  committed
  990ada6

• env3

  lskatz

  committed
  977b9ce

• making the env work properly with format()

  lskatz

  committed
  2a6e792

• env2

  lskatz

  committed
  05869f0

• env3

  lskatz

  committed
  dded4b8

• env4

  lskatz

  committed
  d415f62

• env5

  lskatz

  committed
  c7728dc

• env6

  lskatz

  committed
  ba7ef60

• trying things out

  lskatz

  committed
  3b518a9

• trying things out

  lskatz

  committed
  79f8651

• trying things out

  lskatz

  committed
  795910d

• trying things out

  lskatz

  committed
  b1e05fb

• trying things out

  lskatz

  committed
  d38f32d

• just making the variables work

  lskatz

  committed
  9bcfcf5

• docker cache action

  lskatz

  committed
  a2966cb

• docker cache action

  lskatz

  committed
  723a35d

• Trying to follow satackey more closely

  lskatz

  authored
  3337842

Commits on Sep 23, 2020

• Update travis-docker.yml

  lskatz

  authored
  13dc4cb

• added docker login

  lskatz

  authored
  70100c5

• login before tagging

  lskatz

  authored
  3371264

Commits on Sep 24, 2020

• Rename travis-docker.yml to travis-docker.yml.bak

  lskatz

  authored
  39e18c6

• Create github-docker.yml

  lskatz

  authored
  ba523c2

• removed needs:init

  lskatz

  authored
  f9ab118

• corrected the docker repo

  lskatz

  authored
  75f570c

Commits on Sep 25, 2020

• pushing to both docker and github

  Show description for 91e7c14
  lskatz

  authored
  91e7c14

• renamed the github container name from my-image to sneakernet

  lskatz

  authored
  e4c9acd

• tags: latest

  lskatz

  authored
  937ade1

• adding extra LC_ALL to the end

  lskatz

  committed
  a6e144c

Commits on Oct 1, 2020

• newer blast in Dockerfile

  lskatz

  committed
  e0e9c80

Commits on Oct 2, 2020

• blast library COPY statements

  lskatz

  committed
  32cf9e2

• reverting blast libs

  lskatz

  committed
  e8e8ea9

• getting blast from mlst container

  lskatz

  committed
  a261a2a

• manual installation of staramr

  lskatz

  committed
  7a6ffd3

• manual installation of staramr2

  lskatz

  committed
  2549cce

• tag with hashsum values too

  lskatz

  committed
  d7b55ec

• trying to invoke the sha sum

  lskatz

  committed
  b23f06c

• adding apt-get packages for staramr

  lskatz

  committed
  35ff62c

• trying out docker push v2

  lskatz

  committed
  90b04ad

• trying docker action v2

  lskatz

  committed
  599b0ac

• fixed newline error

  lskatz

  committed
  93c8e5b

• removed ipython-notebook

  lskatz

  committed
  d0e2c28

Commits on Oct 3, 2020

• Update github-docker.yml

  lskatz

  authored
  0c80cd5

• Update Dockerfile

  lskatz

  authored
  142a65a

Commits on Oct 5, 2020

• numpy installation through pip now

  lskatz

  authored
  4d0ca65

• Removing multistage for pip-based images

  lskatz

  authored
  f541da1

• fixed apt-get command syntax

  lskatz

  authored
  10debae

• changed tags to a value instead a list

  lskatz

  authored
  9dce6a7

• updated the tag

  Show description for b47014c
  lskatz

  authored
  b47014c

• list of tags

  lskatz

  authored
  706881b

• pushing to the github registry (?)

  lskatz

  authored
  7ca091a

• one space before pipe

  lskatz

  authored
  525a9bc

• Not sending to github packages; yes sending multiple tags to dockerhub

  lskatz

  authored
  9b331d5

Commits on Oct 6, 2020

• removed list again

  lskatz

  authored
  a90e398

• Rename github-docker.yml to github-docker.yml.bak

  lskatz

  authored
  0ffd2f1

• Create build-and-push-container.yml

  lskatz

  authored
  acab8ed

• added this branch for github actions

  lskatz

  authored
  f6b3a46

Commits on Oct 7, 2020

• added libpython3.5-dev

  Show description for e208ea7
  lskatz

  authored
  e208ea7

• fixed libpython-dev

  lskatz

  authored
  80a9ea6

• libpython3-dev

  lskatz

  authored
  0d4b224

• newline. Does it make things work

  lskatz

  authored
  f02a5f7

• separate some pip3 installations for staramr; removed numpy pip3

  lskatz

  authored
  f072ecf

Commits on Oct 9, 2020

• removing staramr and salmid for right now

  lskatz

  authored
  e84cca7

• removed all platforms except linux/amd64

  lskatz

  authored
  50ccfc5

• uncomment pip commands

  lskatz

  authored
  5ebae80

• combined some pip commands for fewer layers

  lskatz

  authored
  a57b108

• Combined some chewbbaca steps into single layers

  lskatz

  authored
  068e183

Commits on Oct 12, 2020

• RUN echo "LC_ALL=C" >> /etc/environment

  lskatz

  authored
  4f13672

• switched to UTF-8 per instructions

  lskatz

  authored
  d1bc5bc

• apt-get install locales

  lskatz

  authored
  4676496