[Changed]: Removed warning filters in extension_engine as warnings fr…

…om other packages may break downstream analysis [Changed]: years in comments
liyao001 · Nov 7, 2023 · d2d1427 · d2d1427
1 parent 41281dd
commit d2d1427
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Showing 13 changed files with 13 additions and 15 deletions.
diff --git a/pints/__init__.py b/pints/__init__.py
@@ -2,7 +2,7 @@
 # -*- coding: utf-8 -*-
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2021 Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/pints/calling_engine.py b/pints/calling_engine.py
@@ -2,7 +2,7 @@
 # coding=utf-8
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2022. Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/pints/extension_engine.py b/pints/extension_engine.py
@@ -2,7 +2,7 @@
 # coding=utf-8
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2022. Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by
@@ -17,7 +17,6 @@
 import os
 import sys
 import logging
-import warnings
 
 try:
     import numpy as np
@@ -28,7 +27,6 @@
 except ImportError as e:
     missing_package = str(e).replace("No module named '", "").replace("'", "")
     sys.exit("Please install %s first!" % missing_package)
-warnings.filterwarnings("error")
 
 logger = logging.getLogger("PINTS - BoundaryExtender")
 __EXTENDED_FILE_TPL__ = "_element_{de_tag}bp.bed"

diff --git a/pints/io_engine.py b/pints/io_engine.py
@@ -2,7 +2,7 @@
 # coding=utf-8
 #
 # PINTS: Peak Identifier for Nascent Transcripts Starts
-# Copyright (C) 2019-2021 Li Yao at the Yu Lab
+# Copyright (C) 2019-2023 Yu Lab.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

diff --git a/pints/qc_engine.py b/pints/qc_engine.py
@@ -2,7 +2,7 @@
 import os.path
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2022. Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/pints/stats_engine.py b/pints/stats_engine.py
@@ -4,7 +4,7 @@
 # Created on: 2019-08-07
 #
 # PINTS: Peak Identifier for Nascent Transcripts Starts
-# Copyright (C) 2019 Li Yao at the Yu Lab
+# Copyright (C) 2019-2023 Yu Lab.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

diff --git a/scripts/pints_boundary_extender b/scripts/pints_boundary_extender
@@ -2,7 +2,7 @@
 # -*- coding: utf-8 -*-
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2021 Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/scripts/pints_caller b/scripts/pints_caller
@@ -2,7 +2,7 @@
 # coding=utf-8
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2021 Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/scripts/pints_normalizer b/scripts/pints_normalizer
@@ -2,7 +2,7 @@
 # coding=utf-8
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2021 Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/scripts/pints_sample_qc b/scripts/pints_sample_qc
@@ -2,7 +2,7 @@
 # coding=utf-8
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2022. Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/scripts/pints_visualizer b/scripts/pints_visualizer
@@ -2,7 +2,7 @@
 # coding=utf-8
 
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2021 Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/tests/functional_test.py b/tests/functional_test.py
@@ -1,5 +1,5 @@
 #  PINTS: Peak Identifier for Nascent Transcripts Starts
-#  Copyright (c) 2019-2022. Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by

diff --git a/tests/test_em.py b/tests/test_em.py
@@ -1,5 +1,5 @@
 #  PINTS: Peak Identifier for Nascent Transcripts Sequencing
-#  Copyright (c) 2019-2022. Li Yao at the Yu Lab.
+#  Copyright (c) 2019-2023 Yu Lab.
 #
 #  This program is free software: you can redistribute it and/or modify
 #  it under the terms of the GNU General Public License as published by