rename geomxngs workflow names

lilab-bcb · Oct 4, 2022 · 1183afc · 1183afc
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diff --git a/docs/conf.py b/docs/conf.py
@@ -20,13 +20,13 @@
 # -- Project information -----------------------------------------------------
 
 project = 'Cumulus'
-copyright = '2020 - 2022 Genentech, Inc. and the Broad Institute, Inc. All rights reserved.'
+copyright = '2022 Genentech, Inc. and the Broad Institute, Inc. All rights reserved.'
 author = 'Yiming Yang, Joshua Gould and Bo Li'
 
 # The short X.Y version
-version = '2.1'
+version = '2.2'
 # The full version, including alpha/beta/rc tags
-release = '2.1.0'
+release = '2.2.0'
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/docs/release_notes/version_2_2.rst b/docs/release_notes/version_2_2.rst
@@ -5,8 +5,8 @@
 
 * Add `Nanostring GeoMx DSP`_ workflows. It consists of two steps:
 
-    * **GeoMxFastqToDCC** workflow to convert FASTQ files into DCC files by wrapping Nanostring GeoMx Digital Spatial NGS Pipeline.
-    * **GeoMxDCCToCountMatrix** workflow to generate probe count matrix from DCC files with pathologists' annotation.
+    * **GeoMx_fastq_to_dcc** workflow to convert FASTQ files into DCC files by wrapping Nanostring GeoMx Digital Spatial NGS Pipeline.
+    * **GeoMx_dcc_to_count_matrix** workflow to generate probe count matrix from DCC files with pathologists' annotation.
 
 **Updates:**
 

diff --git a/docs/workflow_overview/index.rst b/docs/workflow_overview/index.rst
@@ -23,11 +23,11 @@ Cumulus workflows are written in WDL_ language, and published on Dockstore_. Bel
       - 1.2.0
       - 2021-01-19
       - Run STARsolo to generate gene-count matrices fro FASTQ files.
-    * - `GeoMxFastqToDCC <https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/GeoMxFastqToDCC>`_
+    * - `GeoMx_fastq_to_dcc <https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/GeoMx_fastq_to_dcc>`_
       - 2.2.0
       - 2022-10-04
       - Run Nanostring GeoMx Digital Spatial NGS Pipeline, and convert FASTQ files into DCC files.
-    * - `GeoMxDCCToCountMatrix <https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/GeoMxDCCToCountMatrix>`_
+    * - `GeoMx_dcc_to_count_matrix <https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/GeoMx_dcc_to_count_matrix>`_
       - 2.2.0
       - 2022-10-04
       - Take the DCC zip file from *GeoMxFastqToDCC* workflow, as well as other output of GeoMx DSP machine as the input, and generate an Area Of Interest (AOI) by probe count matrix with pathologists' annotation.