Release version 1.1.1

.github/workflows/publish.yml

@@ -0,0 +1,28 @@
+name: Publish package
+
+on:
+  push:
+    branches: [master]
+  release:
+    types: [published, released]
+
+jobs:
+  deploy:
+    name: "Publish to PyPI"
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python
+      uses: actions/setup-python@v4
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+    - name: Build a binary wheel and a source tarball
+      run: |
+        python -m build --sdist
+    - name: Publish package to PyPI
+      if: github.event_name == 'release' && github.event.action == 'released'
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        password: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/test.yml

@@ -0,0 +1,37 @@
+name: Python package
+
+on: [push, pull_request]
+
+jobs:
+  test_code:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      max-parallel: 12
+      matrix:
+        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
+        os: [ubuntu-latest, windows-latest, macos-latest]
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+        pip install -r test-requirements.txt
+    - name: Install package and dependencies
+      run: |
+        pip install .
+    - name: Build package from source
+      run: |
+        python -m build
+    - name: Run tests
+      run: |
+        py.test --capture=sys --cov=lightlab --cov-config .coveragerc
+    - name: Run linting
+      run: |
+        py.test --pylint --flake8 --pylint-rcfile=pylintrc lightlab
+      continue-on-error: true

CHANGELOG

@@ -1,5 +1,24 @@
 # CHANGELOG
 
+1.1.1:
+    - Bug fixes (including security fixes)
+    - SR830 lockin amplifier driver
+    - Create CITATION.cff
+    - Experimental BOSA driver (by Zhimu)
+    - CI deployment via github
+
+1.1.0:
+    - Bug fixes in various instruments
+    - Included PRBS algorithms for the Anritsu PPG
+    - Improvements to MeasuredFunction
+    - Adding support for Keithley 2606B
+    - PRBS functionality in one_dim
+
+1.0.7:
+    - Bugfixes in PPG3202, DPO4032, and HP_8152A_PM
+    - Housekeeping in test environments
+    - Making DSA8300 work with Prologix driver
+
 1.0.6:
     - Major bug in Prologix driver
     - Minor improvement to APEX driver

CITATION.cff

@@ -0,0 +1,18 @@
+# YAML 1.2
+---
+abstract: "A python library for remote laboratory control."
+authors: 
+  -
+    family-names: Tait
+    given-names: Alex
+  -
+    family-names: "Ferreira de Lima"
+    given-names: Thomas
+cff-version: "1.1.0"
+date-released: 2019-06-28
+license: MIT
+message: "If you use this software, please cite it using these metadata."
+repository-code: "https://github.com/lightwave-lab/lightlab"
+title: Lightlab
+version: "1.0.7"
+...

README.rst

@@ -1,8 +1,9 @@
 Lightlab
 ========
 
-.. image:: https://travis-ci.org/lightwave-lab/lightlab.svg?branch=development
-    :target: https://travis-ci.org/lightwave-lab/lightlab
+.. image:: https://zenodo.org/badge/131508614.svg
+   :target: https://zenodo.org/badge/latestdoi/131508614
+
 
 A python library for remote laboratory control. Laboratory remoting facilitates experimental research:
 
@@ -60,3 +61,7 @@ Server: Mac OS and Linux running ≥python3.6; not tested on Windows (to do).
 
 Auxiliary hosts: Mac OS, Linux, Windows
 
+Acknowledgements
+----------------
+
+This  material  is  based  in part upon  work  supported  by  the  National Science Foundation under Grant Number E2CDA-1740262. Any  opinions,  findings,  and  conclusions  or  recommendations expressed  in  this  material  are  those  of  the  author(s)  and  do  not necessarily reflect the views of the National Science Foundation.

docs/_static/installation/index.rst

@@ -29,8 +29,8 @@ pyvisa
 
 Proceed with installing lightlab once you have something that looks like the following output::
 
-    >>> import visa
-    >>> rm = visa.ResourceManager()
+    >>> import pyvisa
+    >>> rm = pyvisa.ResourceManager()
     >>> print(rm.list_resources())
     ('GPIB0::20::INSTR', 'GPIB1::24::INSTR', 'ASRL1::INSTR', 'ASRL2::INSTR', 'ASRL3::INSTR', 'ASRL4::INSTR')
 

docs/index.rst

@@ -48,8 +48,8 @@ pyvisa
 
     Proceed with enjoying lightlab once you have the following output::
 
-        >>> import visa
-        >>> rm = visa.ResourceManager()
+        >>> import pyvisa
+        >>> rm = pyvisa.ResourceManager()
         >>> print(rm.list_resources())
         ('GPIB0::20::INSTR', 'GPIB1::24::INSTR', 'ASRL1::INSTR', 'ASRL2::INSTR', 'ASRL3::INSTR', 'ASRL4::INSTR')
 
@@ -95,6 +95,13 @@ API
 
     This documentation contains ipython notebooks. It is possible to open them with a jupyter kernel and run them interactively to play with knobs and see more plotting features.
 
+Citing
+------
+
+.. image:: https://zenodo.org/badge/131508614.svg
+   :target: https://zenodo.org/badge/latestdoi/131508614
+
+Then you can download as BibTeX.
 
 * :ref:`genindex`
 * :ref:`modindex`

lightlab/equipment/abstract_drivers/configurable.py

@@ -1,7 +1,7 @@
 from lightlab import visalogger as logger
 from pyvisa import VisaIOError
 from contextlib import contextmanager
-import dpath.util
+import dpath
 import json
 from numpy import floor
 from pathlib import Path
@@ -55,7 +55,7 @@ def get(self, cStr, asCmd=True):
                 asCmd (bool): if true, returns a tuple representing a command. Otherwise returns just the value
         '''
         try:
-            val = dpath.util.get(self.dico, cStr, separator=self.separator)
+            val = dpath.get(self.dico, cStr, separator=self.separator)
         except KeyError:
             raise KeyError(cStr + ' is not present in this TekConfig instance')
         if type(val) is dict and '&' in val.keys():
@@ -69,7 +69,7 @@ def set(self, cStr, val):
         ''' Takes the value only, not a dictionary '''
         # First check that it does not exist as a subdir
         try:
-            ex = dpath.util.get(self.dico, cStr, separator=self.separator)
+            ex = dpath.get(self.dico, cStr, separator=self.separator)
         except KeyError:
             # doesn't exist, we are good to go
             pass
@@ -79,20 +79,20 @@ def set(self, cStr, val):
                 cStr = cStr + self.separator + '&'
 
         cmd = (cStr, val)
-        success = dpath.util.set(self.dico, *cmd, separator=self.separator)
+        success = dpath.set(self.dico, *cmd, separator=self.separator)
         if success != 1:  # it doesn't exist yet
             try:
-                dpath.util.new(self.dico, *cmd, separator=self.separator)
-            except ValueError:
+                dpath.new(self.dico, *cmd, separator=self.separator)
+            except (ValueError, dpath.exceptions.PathNotFound):
                 # We probably have an integer leaf where we would also like to have a directory
                 parent = self.separator.join(cmd[0].split(self.separator)[:-1])
                 try:
                     oldV = self.get(parent, asCmd=False)
                 except KeyError:
                     print('dpath did not take ' + str(cmd))
                     raise
-                dpath.util.set(self.dico, parent, {'&': oldV}, separator=self.separator)
-                dpath.util.new(self.dico, *cmd, separator=self.separator)
+                dpath.set(self.dico, parent, {'&': oldV}, separator=self.separator)
+                dpath.new(self.dico, *cmd, separator=self.separator)
 
     def getList(self, subgroup='', asCmd=True):
         ''' Deep crawler that goes in and generates a command for every leaf.
@@ -105,8 +105,10 @@ def getList(self, subgroup='', asCmd=True):
                 list: list of valid commands (cstr, val) on the subgroup subdirectory
         '''
         cList = []
-        children = dpath.util.search(self.dico, subgroup + '*',
-                                     yielded=True, separator=self.separator)
+        children = dpath.search(
+            self.dico, f'{subgroup}*', yielded=True, separator=self.separator
+        )
+
         for cmd in children:
             s, v = cmd
             if type(v) is not dict:

lightlab/equipment/lab_instruments/Agilent_N5222A_NA.py

@@ -36,9 +36,10 @@ def __init__(self, name='The network analyzer', address=None, **kwargs):
         self.traceNum = 1
         self.auxTrigNum = 1
         self.swpRange = None
+        self.measType = 'S21'
 
     def startup(self):
-        self.measurementSetup('S21')
+        self.measurementSetup(self.measType)
 
     def amplitude(self, amp=None):
         ''' Amplitude is in dBm
@@ -183,20 +184,25 @@ def measurementSetup(self, measType='S21', chanNum=None):
             changed = True
         self.setConfigParam('CALC{}:PAR:MNUM'.format(self.chanNum),
                             self.chanNum, forceHardware=changed)
+
+        retStr = self.query('CALC{}:PAR:CAT:EXT?'.format(chanNum)).strip('"')
         # self.setConfigParam('CALC{}:PAR:SEL'.format(self.chanNum), self.chanNum, forceHardware=changed)
         # wait for changes to take effect
         # This could be improved by something like *OPC? corresponding to the end
         # of the first sweep
         time.sleep(self.getSwpDuration())
+        self.measType = measType
 
     def spectrum(self):
         # raise NotImplementedError('not working')
         # self.setConfigParam('SENS:SWE:GRO:COUN', nGroups)
+
         self.setConfigParam('SENS:SWE:MODE', 'HOLD')
         self.write('SENS:SWE:MODE SING')
         self.query('*OPC?')
 
         self.setConfigParam('FORM', 'ASC')
+
         self.open()
         dbm = self.query_ascii_values('CALC{}:DATA? FDATA'.format(self.chanNum))
         self.close()