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So asked around in the Scala discord communities sbt chat to get help on this and they are quite sure that
Is whats causing the isuse. Even if you don't have any apidocs, having this setting for published artifacts in sonatype causes problems. Other projects such also don't have this setting (see https://github.com/lightbend/sbt-paradox-apidoc/blob/master/build.sbt)
References #31