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19 Open 1 Closed
19 Open 1 Closed
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Issues list

Broken link in SRA and RNA sequence page conda Conda dependencies management concepts and practical knowledge containers Containerization concepts and practical knowledge FAIR Findable Accessible Interoperable Reusable Repro principles git Git concepts and practical knowledge jupyter Jupyter concepts and practical knowledge Nextflow Nextflow concepts and practical knowledge resources Recommended further resources
#29 opened Nov 16, 2021 by staylorx
Add alternative container registry to Singularity containers Containerization concepts and practical knowledge
#28 opened Sep 15, 2021 by cgpu
Provide the notebooks for R and Jupyter notebooks from the Notebook as Scripts course docs Improvements or additions to documentation jupyter Jupyter concepts and practical knowledge Nextflow Nextflow concepts and practical knowledge R R language concepts and practical knowledge resources Recommended further resources
#26 opened Aug 8, 2021 by adeslatt
@cgpu
Provide the notebooks for the Data Management Course docs Improvements or additions to documentation feedback Requests for docs or changes based on feedback form resources Recommended further resources zenodo Accessing, depositing from/to ZENODO
#25 opened Aug 8, 2021 by adeslatt
@cgpu
Recommend resource for finding SRA/ENA data programmatically FAIR Findable Accessible Interoperable Reusable Repro principles resources Recommended further resources
#23 opened Jun 23, 2021 by cgpu
Separate out mamba from Conda as an advanced topic
#21 opened Mar 28, 2021 by adeslatt
@cgpu
Add mini tutorial for retrieving Zenodo data with the R lib inborutils FAIR Findable Accessible Interoperable Reusable Repro principles zenodo Accessing, depositing from/to ZENODO
#19 opened Mar 4, 2021 by cgpu
Recommend resource for Singularity containers Containerization concepts and practical knowledge
#18 opened Jan 4, 2021 by cgpu
Recommend resource for accessibility accessibility Strive for course accessibility R R language concepts and practical knowledge
#17 opened Dec 30, 2020 by cgpu
Recommend resource for Git git Git concepts and practical knowledge resources Recommended further resources
#15 opened Dec 21, 2020 by cgpu
Recommend The FAIRplus cookbook FAIR Findable Accessible Interoperable Reusable Repro principles resources Recommended further resources
#14 opened Dec 20, 2020 by cgpu
Add du -sh command in bash handy commands for calculating used disk space
#13 opened Dec 18, 2020 by cgpu
Add tar {x,c}vzf commands to uncompress/compress files in a tar in bash tutorial
#11 opened Dec 7, 2020 by cgpu
R: Add docs for introduction to R syntax feedback Requests for docs or changes based on feedback form
#10 opened Dec 7, 2020 by cgpu
2 tasks
Jupyter: Provide instructions on how to use in your own laptop feedback Requests for docs or changes based on feedback form
#9 opened Dec 7, 2020 by cgpu
How do we pull data from NCBI GEO? docs Improvements or additions to documentation
#5 opened Dec 2, 2020 by jjbivona
@cgpu
4
Issues
#4 opened Dec 2, 2020 by nayenaye
1
Add tutorial on how to find the terminal on MacOS, Linux and Windows (with ubuntu subsystem)
#2 opened Dec 2, 2020 by cgpu
Find tasks performed with Excel, SigmaStats or Prism to implement with R commands
#1 opened Dec 2, 2020 by cgpu
ProTip! Updated in the last three days: updated:>2025-01-14.